9DFE
Crystal structure of the wild-type thermus thermophilus 70s ribosome in complex with lasso peptide lariocidin and protein y at 2.60a resolution
PDB DOI: 10.2210/pdb9dfe/pdb
Classification: RIBOSOME Organism(s): Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa
Deposited: 2024-08-29 Deposition Author(s): Aleksandrova, E.V. , Coombes, B.K. , Darwish, L. , Jangra, M. , Kaur, M. , Klepacki, D. , Koteva, K. , Mankin, A.S. , Polikanov, Y.S. , Sokaribo, A. , Tiffany, M. , Travin, D.Y. , Vazquez-Laslop, N. , Wang, W. , Wright, G.D.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.6 Å
Crystal structure of the wild-type thermus thermophilus 70s ribosome in complex with lasso peptide lariocidin and protein y at 2.60a resolution
Aleksandrova, E.V. , Coombes, B.K. , Darwish, L. , Jangra, M. , Kaur, M. , Klepacki, D. , Koteva, K. , Mankin, A.S. , Polikanov, Y.S. , Sokaribo, A. , Tiffany, M. , Travin, D.Y. , Vazquez-Laslop, N. , Wang, W. , Wright, G.D.
Primary Citation of Related Structures: 9DFE
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16S Ribosomal RNA | 1a | 1521 | NA | UUGUUGGAGAGUUUGAUCCUGGCUCAGGGUGAACGCUGGCGGCGUGCCUAAGACAUGCAAGUCGUGCGGGCCGCGGGGUUUUACUCCGUGGUCAGCGGCGGACGGGUGAGUAACGCGUGGGUGACCUACCCGGAAGAGGGGGACAACCCGGGGAAACUCGGGCUAAUCCCCCAUGUGGACCCGCCCCUUGGGGUGUGUCCAAAGGGCUUUGCCCGCUUCCGGAUGGGCCCGCGUCCCAUCAGCUAGUUGGUGGGGUAAUGGCCCACCAAGGCGACGACGGGUAGCCGGUCUGAGAGGAUGGCCGGCCACAGGGGCACUGAGACACGGGCCCCACUCCUACGGGAGGCAGCAGUUAGGAAUCUUCCGCAAUGGGCGCAAGCCUGACGGAGCGACGCCGCUUGGAGGAAGAAGCCCUUCGGGGUGUAAACUCCUGAACCCGGGACGAAACCCCCGACGAGGGGACUGACGGUACCGGGGUAAUAGCGCCGGCCAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGCGCGAGCGUUACCCGGAUUCACUGGGCGUAAAGGGCGUGUAGGCGGCCUGGGGCGUCCCAUGUGAAAGACCACGGCUCAACCGUGGGGGAGCGUGGGAUACGCUCAGGCUAGACGGUGGGAGAGGGUGGUGGAAUUCCCGGAGUAGCGGUGAAAUGCGCAGAUACCGGGAGGAACGCCGAUGGCGAAGGCAGCCACCUGGUCCACCCGUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACCGGAUUAGAUACCCGGGUAGUCCACGCCCUAAACGAUGCGCGCUAGGUCUCUGGGUCUCCUGGGGGCCGAAGCUAACGCGUUAAGCGCGCCGCCUGGGGAGUACGGCCGCAAGGCUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAGGCCUUGACAUGCUAGGGAACCCGGGUGAAAGCCUGGGGUGCCCCGCGAGGGGAGCCCUAGCACAGGUGCUGCAUGGCCGUCGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGCCGUUAGUUGCCAGCGGUUCGGCCGGGCACUCUAACGGGACUGCCCGCGAAAGCGGGAGGAAGGAGGGGACGACGUCUGGUCAGCAUGGCCCUUACGGCCUGGGCGACACACGUGCUACAAUGCCCACUACAAAGCGAUGCCACCCGGCAACGGGGAGCUAAUCGCAAAAAGGUGGGCCCAGUUCGGAUUGGGGUCUGCAACCCGACCCCAUGAAGCCGGAAUCGCUAGUAAUCGCGGAUCAGCCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCGAGGGUAGGGCCCGUGACUGGGGCGAAGUCGUAACAAGGUAGCUGUACCGGAAGGUGCGGCUGGAUCACCUCCUUUCU |
| 16S Ribosomal RNA | 2a | 1521 | NA | UUGUUGGAGAGUUUGAUCCUGGCUCAGGGUGAACGCUGGCGGCGUGCCUAAGACAUGCAAGUCGUGCGGGCCGCGGGGUUUUACUCCGUGGUCAGCGGCGGACGGGUGAGUAACGCGUGGGUGACCUACCCGGAAGAGGGGGACAACCCGGGGAAACUCGGGCUAAUCCCCCAUGUGGACCCGCCCCUUGGGGUGUGUCCAAAGGGCUUUGCCCGCUUCCGGAUGGGCCCGCGUCCCAUCAGCUAGUUGGUGGGGUAAUGGCCCACCAAGGCGACGACGGGUAGCCGGUCUGAGAGGAUGGCCGGCCACAGGGGCACUGAGACACGGGCCCCACUCCUACGGGAGGCAGCAGUUAGGAAUCUUCCGCAAUGGGCGCAAGCCUGACGGAGCGACGCCGCUUGGAGGAAGAAGCCCUUCGGGGUGUAAACUCCUGAACCCGGGACGAAACCCCCGACGAGGGGACUGACGGUACCGGGGUAAUAGCGCCGGCCAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGCGCGAGCGUUACCCGGAUUCACUGGGCGUAAAGGGCGUGUAGGCGGCCUGGGGCGUCCCAUGUGAAAGACCACGGCUCAACCGUGGGGGAGCGUGGGAUACGCUCAGGCUAGACGGUGGGAGAGGGUGGUGGAAUUCCCGGAGUAGCGGUGAAAUGCGCAGAUACCGGGAGGAACGCCGAUGGCGAAGGCAGCCACCUGGUCCACCCGUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACCGGAUUAGAUACCCGGGUAGUCCACGCCCUAAACGAUGCGCGCUAGGUCUCUGGGUCUCCUGGGGGCCGAAGCUAACGCGUUAAGCGCGCCGCCUGGGGAGUACGGCCGCAAGGCUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAGGCCUUGACAUGCUAGGGAACCCGGGUGAAAGCCUGGGGUGCCCCGCGAGGGGAGCCCUAGCACAGGUGCUGCAUGGCCGUCGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGCCGUUAGUUGCCAGCGGUUCGGCCGGGCACUCUAACGGGACUGCCCGCGAAAGCGGGAGGAAGGAGGGGACGACGUCUGGUCAGCAUGGCCCUUACGGCCUGGGCGACACACGUGCUACAAUGCCCACUACAAAGCGAUGCCACCCGGCAACGGGGAGCUAAUCGCAAAAAGGUGGGCCCAGUUCGGAUUGGGGUCUGCAACCCGACCCCAUGAAGCCGGAAUCGCUAGUAAUCGCGGAUCAGCCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCGAGGGUAGGGCCCGUGACUGGGGCGAAGUCGUAACAAGGUAGCUGUACCGGAAGGUGCGGCUGGAUCACCUCCUUUCU |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 30S ribosomal protein S15 | 1O | 89 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MPITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRALIEKLGIRG |
| 30S ribosomal protein S15 | 2O | 89 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MPITKEEKQKVIQEFARFPGDTGSTEVQVALLTLRINRLSEHLKVHKKDHHSHRGLLMMVGQRRRLLRYLQREDPERYRALIEKLGIRG |
| 30S ribosomal protein S16 | 1P | 88 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVFRQEAREGA |
| 30S ribosomal protein S16 | 2P | 88 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVFRQEAREGA |
| 30S ribosomal protein S17 | 1Q | 105 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MPKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGRMDLVEKYLIRRQNYESLSKRGGKA |
| 30S ribosomal protein S17 | 2Q | 105 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MPKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGRMDLVEKYLIRRQNYESLSKRGGKA |
| 30S ribosomal protein S18 | 1R | 88 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MSTKNAKPKKEAQRRPSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKLVRK |
| 30S ribosomal protein S18 | 2R | 88 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MSTKNAKPKKEAQRRPSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKLVRK |
| 30S ribosomal protein S19 | 1S | 93 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MPRSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGKEAKATKKK |
| 30S ribosomal protein S19 | 2S | 93 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MPRSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGKEAKATKKK |
| 30S ribosomal protein S20 | 1T | 106 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MAQKKPKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAIQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEAAGAPLIGGGLSA |
| 30S ribosomal protein S20 | 2T | 106 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MAQKKPKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAIQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEAAGAPLIGGGLSA |
| 30S ribosomal protein Thx | 1U | 27 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MGKGDRRTRRGKIWRGTYGKYRPRKKK |
| 30S ribosomal protein Thx | 2U | 27 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MGKGDRRTRRGKIWRGTYGKYRPRKKK |
| 50S ribosomal protein L21 | 1V | 101 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MFAIVKTGGKQYRVEPGLKLRVEKLDAEPGATVELPVLLLGGEKTVVGTPVVEGASVVAEVLGHGRGKKILVSKFKAKVQYRRKKGHRQPYTELLIKEIRG |
| 50S ribosomal protein L21 | 2V | 101 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MFAIVKTGGKQYRVEPGLKLRVEKLDAEPGATVELPVLLLGGEKTVVGTPVVEGASVVAEVLGHGRGKKILVSKFKAKVQYRRKKGHRQPYTELLIKEIRG |
| 50S ribosomal protein L22 | 1W | 113 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDMLEDRLYVKAAYVDEGPALKRVLPRARGRADIIKKRTSHITVILGEKHGK |
| 50S ribosomal protein L22 | 2W | 113 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDMLEDRLYVKAAYVDEGPALKRVLPRARGRADIIKKRTSHITVILGEKHGK |
| 50S ribosomal protein L23 | 1X | 96 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MKTAYDVILAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQVAPGQKIEALEGLI |
| 50S ribosomal protein L23 | 2X | 96 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MKTAYDVILAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQVAPGQKIEALEGLI |
| 30S ribosomal protein S2 | 1B | 256 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MPVEITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQEAEATETPEGESEVEA |
| 30S ribosomal protein S2 | 2B | 256 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MPVEITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQEAEATETPEGESEVEA |
| Ribosome-associated inhibitor A | 1Y | 113 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE |
| Ribosome-associated inhibitor A | 2Y | 113 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE |
| Lasso peptide lariocidin | 1Z | 18 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | SKKSKPGDGKFGRGVKRG |
| Lasso peptide lariocidin | 2Z | 18 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | SKKSKPGDGKFGRGVKRG |
| 50S ribosomal protein L27 | 10 | 85 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MAHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRGRLGRYVHVRPLA |
| 50S ribosomal protein L27 | 20 | 85 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MAHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRGRLGRYVHVRPLA |
| 50S ribosomal protein L28 | 11 | 98 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MSKVCEISGKRPIVANSIQRRGKAKREGGVGKKTTGISKRRQYPNLQKVRVRVAGQEITFRVAASHIPKVYELVERAKGLKLEGLSPKEIKKELLKLL |
| 50S ribosomal protein L28 | 21 | 98 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MSKVCEISGKRPIVANSIQRRGKAKREGGVGKKTTGISKRRQYPNLQKVRVRVAGQEITFRVAASHIPKVYELVERAKGLKLEGLSPKEIKKELLKLL |
| 50S ribosomal protein L29 | 12 | 72 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MKLSEVRKQLEEARKLSPVELEKLVREKKRELMELRFQASIGQLSQNHKIRDLKRQIARLLTVLNEKRRQNA |
| 50S ribosomal protein L29 | 22 | 72 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MKLSEVRKQLEEARKLSPVELEKLVREKKRELMELRFQASIGQLSQNHKIRDLKRQIARLLTVLNEKRRQNA |
| 50S ribosomal protein L30 | 13 | 60 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE |
| 50S ribosomal protein L30 | 23 | 60 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE |
| 50S ribosomal protein L31 | 14 | 71 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MKEGIHPKLVPARIICGCGNVIETYSTKPEIYVEVCSKCHPFYTGQQRFVDTEGRVERFQRRYGDSYRKGR |
| 50S ribosomal protein L31 | 24 | 71 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MKEGIHPKLVPARIICGCGNVIETYSTKPEIYVEVCSKCHPFYTGQQRFVDTEGRVERFQRRYGDSYRKGR |
| 50S ribosomal protein L32 | 15 | 60 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MAKHPVPKKKTSKARRDARRSHHALTPPTLVPCPECKAMKPPHTVCPECGYYAGRKVLEV |
| 50S ribosomal protein L32 | 25 | 60 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MAKHPVPKKKTSKARRDARRSHHALTPPTLVPCPECKAMKPPHTVCPECGYYAGRKVLEV |
| 50S ribosomal protein L33 | 16 | 54 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MASEVRIKLLLECTECKRRNYATEKNKRNTPNKLELRKYCPWCRKHTVHREVKI |
| 50S ribosomal protein L33 | 26 | 54 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MASEVRIKLLLECTECKRRNYATEKNKRNTPNKLELRKYCPWCRKHTVHREVKI |
| 50S ribosomal protein L34 | 17 | 49 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MKRTWQPNRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTPAVRKR |
| 50S ribosomal protein L34 | 27 | 49 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MKRTWQPNRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTPAVRKR |
| 30S ribosomal protein S4 | 1D | 209 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR |
| 30S ribosomal protein S4 | 2D | 209 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR |
| 50S ribosomal protein L35 | 18 | 65 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MPKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKLLLPYE |
| 50S ribosomal protein L35 | 28 | 65 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MPKMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQKGRKFVLAKPEAERIKLLLPYE |
| 50S ribosomal protein L36 | 19 | 37 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MKVRASVKRICDKCKVIRRHGRVYVICENPKHKQRQG |
| 50S ribosomal protein L36 | 29 | 37 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MKVRASVKRICDKCKVIRRHGRVYVICENPKHKQRQG |
| 30S ribosomal protein S3 | 1C | 239 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MGNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTGKNVALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLGVKAYIFLGEVIGGQKPKARPELPKAEERPRRRRPAVRVKKEE |
| 30S ribosomal protein S3 | 2C | 239 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MGNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTGKNVALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLGVKAYIFLGEVIGGQKPKARPELPKAEERPRRRRPAVRVKKEE |
| 50S ribosomal protein L3 | 1E | 206 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MKGILGVKVGMTRIFRDDRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRILREIRDFNPEGDTVTVEIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVMNLEVVDVIPEENLLLVKGAVPGPNGGLVIVRETKKAAK |
| 50S ribosomal protein L3 | 2E | 206 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MKGILGVKVGMTRIFRDDRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRILREIRDFNPEGDTVTVEIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVMNLEVVDVIPEENLLLVKGAVPGPNGGLVIVRETKKAAK |
| 50S ribosomal protein L4 | 1F | 210 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MKEVAVYQIPVLSPSGRRELAADLPAEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTGNELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNRIGGEA |
| 50S ribosomal protein L4 | 2F | 210 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MKEVAVYQIPVLSPSGRRELAADLPAEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTGNELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNRIGGEA |
| 50S ribosomal protein L5 | 1G | 182 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MPLDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTTAETDEEARALLELLGFPFRK |
| 50S ribosomal protein L5 | 2G | 182 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MPLDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTTAETDEEARALLELLGFPFRK |
| 50S ribosomal protein L6 | 1H | 180 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MSRIGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVSEGYSKELLIKGIGYRARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEKGIYYAGEPVRLKPGKAGAKK |
| 50S ribosomal protein L6 | 2H | 180 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MSRIGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVSEGYSKELLIKGIGYRARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEKGIYYAGEPVRLKPGKAGAKK |
| 50S ribosomal protein L9 | 1I | 148 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARIRAQAKRLAERKAEAERLKEILENLTLTIPVRAGETKIYGSVTAKDIAEALSRQHGVTIDPKRLALEKPIKELGEYVLTYKPHPEVPIQLKVSVVAQE |
| 50S ribosomal protein L9 | 2I | 148 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARIRAQAKRLAERKAEAERLKEILENLTLTIPVRAGETKIYGSVTAKDIAEALSRQHGVTIDPKRLALEKPIKELGEYVLTYKPHPEVPIQLKVSVVAQE |
| 30S ribosomal protein S10 | 1J | 105 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MPKIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSREHFELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEIKTVGGGR |
| 30S ribosomal protein S10 | 2J | 105 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MPKIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSREHFELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEIKTVGGGR |
| 30S ribosomal protein S11 | 1K | 129 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MAKKPSKKKVKRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRKAS |
| 30S ribosomal protein S11 | 2K | 129 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MAKKPSKKKVKRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRKAS |
| 30S ribosomal protein S12 | 1L | 132 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MPTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKXLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKEAAKTAAKK |
| 30S ribosomal protein S12 | 2L | 132 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MPTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKXLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKEAAKTAAKK |
| 30S ribosomal protein S13 | 1M | 126 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKKAPRK |
| 30S ribosomal protein S13 | 2M | 126 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKKAPRK |
| 50S ribosomal protein L13 | 1N | 140 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MKTYVPKQVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV |
| 50S ribosomal protein L13 | 2N | 140 | Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Alcaligenes Ammonioxydans , Fragaria Ananassa | MKTYVPKQVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2024-08-29 Deposition Author(s): Aleksandrova, E.V. , Coombes, B.K. , Darwish, L. , Jangra, M. , Kaur, M. , Klepacki, D. , Koteva, K. , Mankin, A.S. , Polikanov, Y.S. , Sokaribo, A. , Tiffany, M. , Travin, D.Y. , Vazquez-Laslop, N. , Wang, W. , Wright, G.D.