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FASTA Sequence PDB Format mmCIF Format
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9D3T

147-bp 5s rdna nucleosome cross-linked with glutaraldehyde

PDB DOI: 10.2210/pdb9d3t/pdb

Classification: GENE REGULATION/DNA
Organism(s): Homo Sapiens , Xenopus Borealis

Deposited: 2024-08-11
Deposition Author(s): Alegrio Louro, J. , Cruz-Becerra, G. , Kadonaga, J.T. , Leschziner, A.E.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

9d3t
Literature

147-bp 5s rdna nucleosome cross-linked with glutaraldehyde

Alegrio Louro, J. , Cruz-Becerra, G. , Kadonaga, J.T. , Leschziner, A.E.

Primary Citation of Related Structures: 9D3T


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 93 Homo Sapiens , Xenopus Borealis PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 E 93 Homo Sapiens , Xenopus Borealis PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 78 Homo Sapiens , Xenopus Borealis DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG
Histone H4 F 78 Homo Sapiens , Xenopus Borealis DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG
Histone H2A type 2-A C 103 Homo Sapiens , Xenopus Borealis KSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLP
Histone H2A type 2-A G 103 Homo Sapiens , Xenopus Borealis KSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLP
Histone H2B type 1-M D 89 Homo Sapiens , Xenopus Borealis ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS
Histone H2B type 1-M H 89 Homo Sapiens , Xenopus Borealis ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5S rDNA (noncoding strand) i 100 NA GAAAAGACCCTGGCATGGGGAGGAGCTGGGCCCCCCCCAGAAGGCAGCACAAGGGGAGGAAAAGTCAGCCTTGTGCTCGCCTACGGCCATACCACCCTGA
5S rDNA (coding strand) j 100 NA TCAGGGTGGTATGGCCGTAGGCGAGCACAAGGCTGACTTTTCCTCCCCTTGTGCTGCCTTCTGGGGGGGGCCCAGCTCCTCCCCATGCCAGGGTCTTTTC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-08-11
Deposition Author(s): Alegrio Louro, J. , Cruz-Becerra, G. , Kadonaga, J.T. , Leschziner, A.E.