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FASTA Sequence PDB Format mmCIF Format
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9D3O

167-bp 5s rdna nucleosome - closed

PDB DOI: 10.2210/pdb9d3o/pdb

Classification: GENE REGULATION/DNA
Organism(s): Homo Sapiens , Xenopus Borealis

Deposited: 2024-08-11
Deposition Author(s): Alegrio Louro, J. , Cruz-Becerra, G. , Kadonaga, J.T. , Leschziner, A.E.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.0 Å

9d3o
Literature

167-bp 5s rdna nucleosome - closed

Alegrio Louro, J. , Cruz-Becerra, G. , Kadonaga, J.T. , Leschziner, A.E.

Primary Citation of Related Structures: 9D3O


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 99 Homo Sapiens , Xenopus Borealis KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 E 99 Homo Sapiens , Xenopus Borealis KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 82 Homo Sapiens , Xenopus Borealis VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 82 Homo Sapiens , Xenopus Borealis VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2B type 1-M D 95 Homo Sapiens , Xenopus Borealis RKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS
Histone H2B type 1-M H 95 Homo Sapiens , Xenopus Borealis RKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS
Histone H2A type 2-A C 109 Homo Sapiens , Xenopus Borealis RAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
Histone H2A type 2-A G 109 Homo Sapiens , Xenopus Borealis RAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (noncoding strand) i 145 NA CTTGTTTTCCTGCCTGGGGGAAAAGACCCTGGCATGGGGAGGAGCTGGGCCCCCCCCAGAAGGCAGCACAAGGGGAGGAAAAGTCAGCCTTGTGCTCGCCTACGGCCATACCACCCTGAAAGTGCCCGATATCGTCTGATCTCGG
DNA (coding strand) j 145 NA CCGAGATCAGACGATATCGGGCACTTTCAGGGTGGTATGGCCGTAGGCGAGCACAAGGCTGACTTTTCCTCCCCTTGTGCTGCCTTCTGGGGGGGGCCCAGCTCCTCCCCATGCCAGGGTCTTTTCCCCCAGGCAGGAAAACAAG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-08-11
Deposition Author(s): Alegrio Louro, J. , Cruz-Becerra, G. , Kadonaga, J.T. , Leschziner, A.E.