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FASTA Sequence PDB Format mmCIF Format
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9D3N

167-bp 5s rdna nucleosome cross-linked with glutaraldehyde

PDB DOI: 10.2210/pdb9d3n/pdb

Classification: GENE REGULATION/DNA
Organism(s): Homo Sapiens , Xenopus Borealis

Deposited: 2024-08-11
Deposition Author(s): Alegrio Louro, J. , Cruz-Becerra, G. , Kadonaga, J.T. , Leschziner, A.E.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.0 Å

9d3n
Literature

167-bp 5s rdna nucleosome cross-linked with glutaraldehyde

Alegrio Louro, J. , Cruz-Becerra, G. , Kadonaga, J.T. , Leschziner, A.E.

Primary Citation of Related Structures: 9D3N


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 90 Homo Sapiens , Xenopus Borealis GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE
Histone H3.2 E 90 Homo Sapiens , Xenopus Borealis GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE
Histone H4 B 79 Homo Sapiens , Xenopus Borealis DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 79 Homo Sapiens , Xenopus Borealis DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 2-A C 91 Homo Sapiens , Xenopus Borealis SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGG
Histone H2B type 1-M D 89 Homo Sapiens , Xenopus Borealis SYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS
Histone H2B type 1-M H 89 Homo Sapiens , Xenopus Borealis SYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS
Histone H2A type 2-A G 91 Homo Sapiens , Xenopus Borealis SSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5S rDNA (noncoding strand) i 96 NA GACCCTGGCATGGGGAGGAGCTGGGCCCCCCCCAGAAGGCAGCACAAGGGGAGGAAAAGTCAGCCTTGTGCTCGCCTACGGCCATACCACCCTGAA
5S rDNA (coding strand) j 96 NA TTCAGGGTGGTATGGCCGTAGGCGAGCACAAGGCTGACTTTTCCTCCCCTTGTGCTGCCTTCTGGGGGGGGCCCAGCTCCTCCCCATGCCAGGGTC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-08-11
Deposition Author(s): Alegrio Louro, J. , Cruz-Becerra, G. , Kadonaga, J.T. , Leschziner, A.E.