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FASTA Sequence PDB Format mmCIF Format
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9CB5

Crystal structure of nucleolin in complex with myc promoter g-quadruplex

PDB DOI: 10.2210/pdb9cb5/pdb

Classification: TRANSCRIPTION/DNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2024-06-18
Deposition Author(s): Chen, L. , Dickerhoff, J. , Noinaj, N. , Yang, D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.6 Å

9cb5
Literature

Crystal structure of nucleolin in complex with myc promoter g-quadruplex

Chen, L. , Dickerhoff, J. , Noinaj, N. , Yang, D.

Primary Citation of Related Structures: 9CB5


Proteins
Molecule Chains Sequence Length Organism Sequence
Nucleolin A 347 Homo Sapiens , Synthetic Construct GGGGHMFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSSNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP
Nucleolin B 347 Homo Sapiens , Synthetic Construct GGGGHMFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSSNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP
Fab heavy chain D 246 Homo Sapiens , Synthetic Construct EISEVQLVESGGGLVQPGGSLRLSCAASGFNIYYYSIHWVRQAPGKGLEWVASISPSYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARWSRWAYSYWSYKSYGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTSRHHHHHH
Fab heavy chain G 246 Homo Sapiens , Synthetic Construct EISEVQLVESGGGLVQPGGSLRLSCAASGFNIYYYSIHWVRQAPGKGLEWVASISPSYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARWSRWAYSYWSYKSYGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTSRHHHHHH
Fab light chain H 215 Homo Sapiens , Synthetic Construct SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSGGGPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Fab light chain I 215 Homo Sapiens , Synthetic Construct SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSGGGPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
MYC promoter G-quadruplex c 28 NA ATCGCTAGGGAGGGTTTTTAGGGTGGGT
MYC promoter G-quadruplex f 28 NA ATCGCTAGGGAGGGTTTTTAGGGTGGGT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2024-06-18
Deposition Author(s): Chen, L. , Dickerhoff, J. , Noinaj, N. , Yang, D.