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FASTA Sequence PDB Format mmCIF Format
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9C2H

Sars-cov-2 nucleocapsid dimerization domain bound to fab-np1e9 and fab-np3b4

PDB DOI: 10.2210/pdb9c2h/pdb

Classification: VIRAL PROTEIN
Organism(s): Mus Sp. , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2024-05-31
Deposition Author(s): Diaz Avalos, R. , Hariharan, C. , Landeras-Bueno, S. , Ollmann Saphire, E.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.7 Å

Literature

Sars-cov-2 nucleocapsid dimerization domain bound to fab-np1e9 and fab-np3b4

Diaz Avalos, R. , Hariharan, C. , Landeras-Bueno, S. , Ollmann Saphire, E.

Primary Citation of Related Structures: 9C2H


Proteins
Molecule Chains Sequence Length Organism Sequence
Nucleoprotein A 144 Mus Sp. , Severe Acute Respiratory Syndrome Coronavirus 2 MAHHHHHHVDDDDKMENLYFQGMQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFP
Nucleoprotein D 144 Mus Sp. , Severe Acute Respiratory Syndrome Coronavirus 2 MAHHHHHHVDDDDKMENLYFQGMQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDAYKTFP
Antibody Fab NP3-B4 Heavy Chain (variable region) B 238 Mus Sp. , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGLVQPGGSVKLSCLASGFTFSDYYMSWVRQSPEKGLEWVAEIRLESDNYATHYAESVKGKFTISRDDSKSRLYLKMNSLRGEDTGIYYCAFDVYYGGAMDYWGQGTTVTVEVQLVESGGGLVQPGGSVKLSCLASGFTFSDYYMSWVRQSPEKGLEWVAEIRLESDNYATHYAESVKGKFTISRDDSKSRLYLKMNSLRGEDTGIYYCAFDVYYGGAMDYWGQGTTVTV
Antibody Fab NP3-B4 Heavy Chain (variable region) G 238 Mus Sp. , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGLVQPGGSVKLSCLASGFTFSDYYMSWVRQSPEKGLEWVAEIRLESDNYATHYAESVKGKFTISRDDSKSRLYLKMNSLRGEDTGIYYCAFDVYYGGAMDYWGQGTTVTVEVQLVESGGGLVQPGGSVKLSCLASGFTFSDYYMSWVRQSPEKGLEWVAEIRLESDNYATHYAESVKGKFTISRDDSKSRLYLKMNSLRGEDTGIYYCAFDVYYGGAMDYWGQGTTVTV
Antibody Fab NP3-B4 Light Chain (variable region) C 107 Mus Sp. , Severe Acute Respiratory Syndrome Coronavirus 2 CDIQMTQSPSIMSASPGEKVTMTCSASSSVSYMHWYQQKSSTSPKLWIYDTSELASGVPGRFSGSRSGNSYSLTISSMEAEDVATYYCFQGSGYPLTFGGGTKLELK
Antibody Fab NP3-B4 Light Chain (variable region) H 107 Mus Sp. , Severe Acute Respiratory Syndrome Coronavirus 2 CDIQMTQSPSIMSASPGEKVTMTCSASSSVSYMHWYQQKSSTSPKLWIYDTSELASGVPGRFSGSRSGNSYSLTISSMEAEDVATYYCFQGSGYPLTFGGGTKLELK
Antibody Fab NP1-E9 Heavy Chain (variable region) E 115 Mus Sp. , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLQQSGPELVKPGTLVKISCKASGYTFTSYDINWVKQRPGQGLEWIGWIYPGDGSTKYNEKFKGKATLTADTSSSTAYMQLNSLTSENSAVYFCARGLVGAMDYWGQGTSVTV
Antibody Fab NP1-E9 Heavy Chain (variable region) I 115 Mus Sp. , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLQQSGPELVKPGTLVKISCKASGYTFTSYDINWVKQRPGQGLEWIGWIYPGDGSTKYNEKFKGKATLTADTSSSTAYMQLNSLTSENSAVYFCARGLVGAMDYWGQGTSVTV
Antibody Fab NP1-E9 Light Chain (variable region) F 107 Mus Sp. , Severe Acute Respiratory Syndrome Coronavirus 2 DIVMTQSQKFMSTSVGDRVSVTCKASQNVLNNVAWYQQKPGQSPKALIYSASYRYSGVPDRFTGSGSGTDFTLTISNVQSEDLAEYFCQQYNSYPLTFGDGTKLELK
Antibody Fab NP1-E9 Light Chain (variable region) J 107 Mus Sp. , Severe Acute Respiratory Syndrome Coronavirus 2 DIVMTQSQKFMSTSVGDRVSVTCKASQNVLNNVAWYQQKPGQSPKALIYSASYRYSGVPDRFTGSGSGTDFTLTISNVQSEDLAEYFCQQYNSYPLTFGDGTKLELK
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-05-31
Deposition Author(s): Diaz Avalos, R. , Hariharan, C. , Landeras-Bueno, S. , Ollmann Saphire, E.