9BZ0
Structure of an stk19-containing tc-ner complex
PDB DOI: 10.2210/pdb9bz0/pdb
Classification: TRANSCRIPTION/DNA/RNA Organism(s): Homo Sapiens , Sus Scrofa , Synthetic Construct
Deposited: 2024-05-24 Deposition Author(s): Farnung, L. , Kuemmecke, M. , Mevissen, T.E.T. , Walter, J.C.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 1.9 Å
Structure of an stk19-containing tc-ner complex
Farnung, L. , Kuemmecke, M. , Mevissen, T.E.T. , Walter, J.C.
Primary Citation of Related Structures: 9BZ0
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA excision repair protein ERCC-8 | A | 396 | Homo Sapiens , Sus Scrofa , Synthetic Construct | MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEG |
| DNA-directed RNA polymerases I, II, and III subunit RPABC5 | J | 67 | Homo Sapiens , Sus Scrofa , Synthetic Construct | MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK |
| RNA polymerase II subunit J | K | 117 | Homo Sapiens , Sus Scrofa , Synthetic Construct | MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE |
| RNA polymerase II subunit K | L | 58 | Homo Sapiens , Sus Scrofa , Synthetic Construct | MDTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR |
| Transcription elongation factor 1 homolog | M | 85 | Homo Sapiens , Sus Scrofa , Synthetic Construct | SNAGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAANQ |
| DNA-directed RNA polymerase subunit beta | B | 1251 | Homo Sapiens , Sus Scrofa , Synthetic Construct | MCSTNLSQALAYFRAGANLTAASLWAGFRGSRRIFWERRKRKSLCLALRPGGACWRWLLAVSCVSLRGLGAPGSCANMYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV |
| DNA-directed RNA polymerase II subunit RPB3 | C | 275 | Homo Sapiens , Sus Scrofa , Synthetic Construct | MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPSDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN |
| RNA polymerase Rpb4/RPC9 core domain-containing protein | D | 142 | Homo Sapiens , Sus Scrofa , Synthetic Construct | MAAGGSDPRAGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQTKRSFQY |
| DNA-directed RNA polymerase II subunit E | E | 210 | Homo Sapiens , Sus Scrofa , Synthetic Construct | MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLVQ |
| DNA-directed RNA polymerases I, II, and III subunit RPABC2 | F | 127 | Homo Sapiens , Sus Scrofa , Synthetic Construct | MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD |
| DNA-directed RNA polymerase II subunit RPB7 | G | 172 | Homo Sapiens , Sus Scrofa , Synthetic Construct | MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS |
| DNA-directed RNA polymerases I, II, and III subunit RPABC3 | H | 150 | Homo Sapiens , Sus Scrofa , Synthetic Construct | MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGFEVDSRVYLLMKKLAF |
| DNA-directed RNA polymerase II subunit RPB9 | I | 125 | Homo Sapiens , Sus Scrofa , Synthetic Construct | MEPDGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (35-MER) | n | 90 | NA | CTAGTTGATCTCATATTTCATTCCTACTCAGGAGAAGGAGCAGAGCGAATGTGCTCATTGTTGCGAGCTCGAATTCACTGGAGTGACCTC |
| RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3') | p | 10 | NA | AUCGAGAGGA |
| DNA (49-MER) | t | 90 | NA | GAGGTCACTCCAGTGAATTCGAGCTCGCAACAATGAGCACATTCGCTCTGCTCCTTCTCCCATCCTCTCGATGGCTATGAGATCAACTAG |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-05-24 Deposition Author(s): Farnung, L. , Kuemmecke, M. , Mevissen, T.E.T. , Walter, J.C.