9BWD
Cryo-em structure of respiratory supercomplex i
PDB DOI: 10.2210/pdb9bwd/pdb
Classification: ELECTRON TRANSPORT Organism(s): Sus Scrofa
Deposited: 2024-05-21 Deposition Author(s): Maharjan, R. , Tringides, M. , Zhang, Z.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.88 Å
Cryo-em structure of respiratory supercomplex i
Maharjan, R. , Tringides, M. , Zhang, Z.
Primary Citation of Related Structures: 9BWD
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 | B | 188 | Sus Scrofa | MPSHYAQIGAARGQDPSDVVTARRSQVSSQGRFAEGEARVCDRTLVQGRAVSCFLGTGGDMSGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPRRVWPMEQFWNKFLQDGAPWKNVIYKTYRHSIFAVTHVLIPVWIIHYYLKYHVTAKPYTVVERKPRIFPGDTILETGEVIPLMKEFPDQHH |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 | N | 58 | Sus Scrofa | MMNVLQIVRDHWVHILVPVGFVFGCYLDRRSDEKLTAFRNKSLLFKRELRPNEEVTWK |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 | O | 129 | Sus Scrofa | MSFPKYKPSRLATLPATLDPAEYDISPETRKAQAERLAIRSRLKREYLLQYNDPNRLGVIEDPALIRWTYARSANIYPNFRPTPKTSLLGALFGIGPLFFWYYVFKTDRDKKEKLIQEGKLDQTFNISY |
| Acyl carrier protein | X | 156 | Sus Scrofa | MAARVLCACVRRLPAAFAPLPRIPTVVAARPLSTTLFPTGAQARSRALQPALVLAQAPGGVTQLCRRYSDAPPLTLEAIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 | P | 221 | Sus Scrofa | MTAALAPPRRKRKWPPLAPPFRGSPTPRFPAAPAAAEGERAVMAFSAPAAYLTHQQKVLRLYKRALRHLESWCVHRDKYRYFACLMRARFDEHKNEKDMVKATQLLRQAEEEFWYGQHPQPYIFPESPGGTSYERYECYKVPEWCLDDWHPSEKAMYPDYFAKREQWKRLRRESWEREVKQLQEETPPGGPRTEALPPARKEGDLPPLWWHIVTRPRERPM |
| NADH-ubiquinone oxidoreductase chain 4 | Q | 459 | Sus Scrofa | MLKIIIPTTMLLPMTWMSKHNMIWINATVHSLLISLISLSLLNQLGENSLNFSLTFFSDSLSAPLLVLTTWLLPLMLMASQSHLSKETTTRKKLYITMLILLQLFLIMTFTATELILFYILFEATLVPTLIIITRWGNQTERLNAGLYFLFYTLAGSLPLLVALVYIQNTTGSLNFLIIHYWSHPLSNSWSNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITTILNPLTNYMAYPFLMLSMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSMLFCLANTNYERVHSRTMILARGLQTLLPLMATWWLMASLTNLALPPSINLIGELFIITASFSWSNITIILMGMNMMITALYSLYMLITTQRGKYTHHINNIKASFTRENALMALHILPLLLLTLNPKMILGPLY |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial | U | 357 | Sus Scrofa | MALRLLRLAPASASAVPRGLGAVAQRVGGIHTGAPCRLQYGPLAFVLGERTTRKLTETSKVITVDGNICSGKGRLAREIAEKLGLRHFPEAGIHYADSTTGDGKPLDVQLSGNCSLEKFYDDPKSNDGNSYRLQSWLYASRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYRQGFIRKQCVEHYNEVKKVTACEYLPPHVVVYVDVPVPEIQSRIQKKGNPHEMKITAAYLQDIENAYKKTFLPEMSEKCEVLQYSAREAEDAEKVVEDIEYLKCDKGPWPDQDDRTFHRLRMLVQNKLEVLNYTTIPVYLPEITIGAHQSDRVFQKFTELPGRKYSPGYNEDVGDKWIWLK |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 | V | 141 | Sus Scrofa | MAKTLLHKYSDIPEGTECHRKAYASTSIGGATGLIVSAYSIALKPPASFLEGVARTGRYTFTSAAIGAIFGLTSCISAQVREKPDDPLNYFIGGCAGGLTLGARTRSYGIGAAACAYMGLTAALVKMGQLEGWQVFAEPKV |
| NADH:ubiquinone oxidoreductase subunit B2 | Y | 105 | Sus Scrofa | MSPLQRLAPFTRVGGRFLRGRGAGVAGGGGVRHAGGGVHIEPRYRQFPQLTRSQLIQAEFFSATMWFWILWRFWHDSDAVLGHFPYPDPSQWTDEELGILPDDED |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 | Z | 114 | Sus Scrofa | MLSVLRGQIAVSFPIDMAHGHGHEHGHSKMELPDYKQWKIEGTPLETVQEKLAARGLRDPWGRNEAWRYSGGFANNVSFVGALLKGFKWGFAAFVVAVGAEYYLESQNKDKKHH |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial | A | 189 | Sus Scrofa | MAAMSLLQRASVTAVATLSRSRLGTRFGFGGFLTHGFPKTGAPVRHSGDHGKRLFIIKPSGFYDRRFLKLMRFYILLTGIPVAIGITLVNVFIGEAELADIPEGYVPEHWEYFKHPISRWIARTFYDGPEKNYEKTMAILQIEAEKAELRLKELEVRRLMRARGDGPWYQYPTIDKALIDHSPKTTPDN |
| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial | C | 469 | Sus Scrofa | SLWRGKMAALRALCSLRGVAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQFGGAVMYPTKETAHWKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIISQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR |
| NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 | H | 106 | Sus Scrofa | MPFFDVQKRLGLDLDRWMTIQSAEQPHKIPGRCHAFEKEWIECAHGIGGIRAEKECKIEFDDFVECLLRQKTMKRLSAIKRQRDKLIKEGKYTPPPHHLGKEDPRP |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 | S | 249 | Sus Scrofa | MTTGGMGGAEAKSRPQTPRNFLALRTLCVSRLDGARRLRAAAAHAQTLGGPSAVGRGVQGDPGDATSGISSVRATAIMPGIVELPTLEDLKVQEVKVSSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNQCALDFFRQIKRHCAEPFTEYWTCIDYSGLQLFRHCRKQQAKFDECVLDKLGWVRPDLGELSKVTKVKTDRPLPENPYHSRARPEPNPEAEGDLKPAKHGSRLFFWTM |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial | E | 154 | Sus Scrofa | MAAGVLGLCARRLLAAAATRGLPAARVRWESGSSRAVIAPSALVGKRPPEPTIRLQEDPDPEDENLYEKNPDSHGYDKDPIVDLWNMRVVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVKYREANGLPLMESNCFDPNKIQLPEDED |
| NADH-ubiquinone oxidoreductase chain 5 | L | 606 | Sus Scrofa | MNPFASLTLTTLIILTIPIMMSNSNIYKTNLYPNYVKTTVSYAFTLSLVPLLMFMHTGQEMIISNWHWMTLQTVELSLSFKMDYFSVMFIPVALFVTWSIMEFSMWYMHSDPFINRFFKYLVLFLITMMILVTANNLFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDIGFVLSMAWFLTHSNAWDLQQIFMLNNECPNMPLIGLLLAAAGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRFYPLMETNKLVQTMTLCLGAITTLFTALCAITQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICMHAFFKAMLFMCSGSIIHSLNDEQDIRKMGGLYKAMPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVNMSYTNAWALLMTLIATSLTAAYSTRIIFFAFLGKPRFPPLVLINENNPLLINSIKRLLIGSIFAGFIISNNIPPMTVPNTTMPLYMKMTALIVTIMGFMLALELNNTTYYLKFKYPSQTYKFSNMLGYYPSIMHRLPTYHNLSMSQKSASSLLDLIWLETILPKTTSFIQMKMSIMVSNQKGLIKLYFLSFLITIMISMTLFNYHE |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 | T | 137 | Sus Scrofa | MGAHLARRYLGDASKEPDPLRMPTFPPDYGFPERKEREMVATQQEMNDAQLMLQQRDYCAHYLIQLLKCKRDSFPNFLACKHEQHDWDYCEHLDYVKRMKEFERERRLLQRKKRREQREAEMARGQGPGEVAPEMAL |
| NADH:ubiquinone oxidoreductase subunit A13 | W | 144 | Sus Scrofa | MAASKVKQDMPPPGGYGPIDYKRNLPRRGLSGYSMFAVGIGTLLFGYWSMMKWNRERRRLQIEDFEARIALMPLFQAEKDRRVLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVTPMMGELYGLRTNEEILSATYGFIWYT |
| NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial | D | 264 | Sus Scrofa | MAAAAAARGCWRGLVGPAAVARVSGRPSVLLLPVRKESAAADTRPTIRPRNDVVHKQLSAFGQYVAEILPKYVQQVQVSCFNELEIFIHPDGVIPVLTFLRDHTNAQFKSLADLTAVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESSVTVYKAANWYEREIWDMFGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQPPEDLKLEAGDKKPETK |
| NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial | F | 123 | Sus Scrofa | MAAVTFLRLLGRSGAGARNLLGGSRCFGVRTSPTGEKVTHTGQAYDDGDYRRVRFSDRQKEVNENFAIDLIAEQPVSEVGSRVISCDGGGGALGHPRVYINLDKETKTGTCGYCGLQFRQPHH |
| NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial | G | 727 | Sus Scrofa | MLRIPVTRALIGLSKSPKGCVRTTATAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGSDRSRFLEGKRAVEDKNIGPLVKTIMTRCIQCTRCIRFASEIAGVDDLGTTGRGNDMQVGTYIEKMFMSELSGNIIDICPVGALTSKPYAFTARPWETRKTESIDVMDAVGSNIVVSTRTGEVMRILPRMHEDINEEWISDKTRFAYDGLKRQRLTQPMIRNEKGLLTYTTWEDALSRVAGMLQSFQGNDVAAIAGGLVDAEALVALKDLLNRVDSDSLCTEEVFPTAGAGTDLRSNYLLNTTIAGVEEADVILLVGTNPRFEAPLFNARIRKSWLHNDLKVALIGSPVDLTYRYDHLGDSPKILQDIASGNHPFSQILKEAKKPMVVLGSSALQRSDGTAILAAVSNIAQNIRLSSGVTGDWKVMNILHRIASQVAALDLGYKPGVEAIRKNPPKVLFLLGADGGCITRQDLPKDCFIIYQGHHGDVGAPMADVILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGMTLPYDTLDQVRSRLEEVSPNLVRYDDVEGANYFQQANELSKLVNQQLLADPLVPPQLTIKDFYMTDSISRASQTMAKCVKAVTEGIQAVEEPSIC |
| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial | I | 258 | Sus Scrofa | MRNVSTQVPVSAHRPSRFGQRPRIPGALQRTDRRGCLKAEAEMAALAASGLLRPILALRSSMGAAVQVRFVHPSAATDSPSSSQPAVSQAGAVVSKPTTLPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREKRLRIWYRR |
| NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial | J | 175 | Sus Scrofa | MAAVSMSVALKQALWGRRAAAVGAVSVSKVPTRLLSTSTWRLAQDQTQDTQLIAVDEKLDITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWSSTADPLSNLVLTFSTKEDAVAFAEKNGWSFDVEERKVPKPKSKSYGANFSWNKRTRVSTK |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 | K | 145 | Sus Scrofa | MELVQVLRRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGRDTFWDVDGSMVPPEWHRWLHCMTDDPPTTKPPTARKYIWTNHKFNVSGTPQQYVPYSTTRKKIQEWVPPSTPYK |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 | M | 113 | Sus Scrofa | MASATRVIQLLRNWASGRDLQAKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRREAMPPSIVMSSQKVLASGKPAESSAVAETEKKAVTPAPPIKRWELSKDQPYL |
| NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial | R | 110 | Sus Scrofa | MAASLLLRQGRARALKTVLLEGGVFRGLAPAVSLSAESGRNEKERPPNPKKQSPPKKPTPAAAAAEPFDNSTYRNLQHHEYSTYTFLDLNVELSKFRMPQPSSGRQSPRH |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-05-21 Deposition Author(s): Maharjan, R. , Tringides, M. , Zhang, Z.