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9BS6

Cryoem structure of thermocas9 in post-cleavage state with a dna containing nnnncga pam

PDB DOI: 10.2210/pdb9bs6/pdb

Classification: HYDROLASE/DNA/RNA
Organism(s): Geobacillus Thermodenitrificans , Synthetic Construct

Deposited: 2024-05-13
Deposition Author(s): Shu, Y. , Zhao, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.6 Å

9bs6
Literature

Cryoem structure of thermocas9 in post-cleavage state with a dna containing nnnncga pam

Shu, Y. , Zhao, Y.

Primary Citation of Related Structures: 9BS6


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (25-MER) c 26 NA CAGGATCTTGCCATCCTACCTCTAGA
DNA (5'-D(P*GP*TP*AP*TP*AP*CP*AP*CP*GP*AP*AP*GP*CP*T)-3') d 34 NA GGTAGGATGGCAAGATCCTGGTATACACGAAGCT
DNA (5'-D(*AP*GP*CP*TP*TP*CP*GP*TP*GP*TP*AP*TP*AP*C)-3') p 14 NA AGCTTCGTGTATAC
DNA (5'-D(P*CP*TP*AP*GP*A)-3') x 6 NA TCTAGA
RNA (114-MER) b 149 NA GGUAGGAUGGCAAGAUCCUGGUAGUCAUAGUUCCCCUGGAAACAGGGUUACUAUGAUAAGGGCUUUCUGCCUAUAGGCAGACUGACCCGUGGCGUUGGGGAUCGCCUAUCGCCCGCUUUCUUCGGGCAUUCCCCACUCUUAGGCGUUUU

Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated endonuclease Cas9 A 1082 Geobacillus Thermodenitrificans , Synthetic Construct MKYKIGLDIGITSIGWAVINLDIPRIEDLGVRIFDRAENPKTGESLALPRRLARSARRRLRRRKHRLERIRRLFVREGILTKEELNKLFEKKHEIDVWQLRVEALDRKLNNDELARILLHLAKRRGFRSNRKSERTNKENSTMLKHIEENQSILSSYRTVAEMVVKDPKFSLHKRNKEDNYTNTVARDDLEREIKLIFAKQREYGNIVCTEAFEHEYISIWASQRPFASKDDIEKKVGFCTFEPKEKRAPKATYTFQSFTVWEHINKLRLVSPGGIRALTDDERRLIYKQAFHKNKITFHDVRTLLNLPDDTRFKGLLYDRNTTLKENEKVRFLELGAYHKIRKAIDSVYGKGAAKSFRPIDFDTFGYALTMFKDDTDIRSYLRNEYEQNGKRMENLADKVYDEELIEELLNLSFSKFGHLSLKALRNILPYMEQGEVYSTACERAGYTFTGPKKKQKTVLLPNIPPIANPVVMRALTQARKVVNAIIKKYGSPVSIHIELARELSQSFDERRKMQKEQEGNRKKNETAIRQLVEYGLTLNPTGLDIVKFKLWSEQNGKCAYSLQPIEIERLLEPGYTEVDHVIPYSRSLDDSYTNKVLVLTKENREKGNRTPAEYLGLGSERWQQFETFVLTNKQFSKKKRDRLLRLHYDENEENEFKNRNLNDTRYISRFLANFIREHLKFADSDDKQKVYTVNGRITAHLRSRWNFNKNREESNLHHAVDAAIVACTTPSDIARVTAFYQRREQNKELSKKTDPQFPQPWPHFADELQARLSKNPKESIKALNLGNYDNEKLESLQPVFVSRMPKRSITGAAHQETLRRYIGIDERSGKIQTVVKKKLSEIQLDKTGHFPMYGKESDPRTYEAIRQRLLEHNNDPKKAFQEPLYKPKKNGELGPIIRTIKIIDTTNQVIPLNDGKTVAYNSNIVRVDVFEKDGKYYCVPIYTIDMMKGILPNKAIEPNKPYSEWKEMTEDYTFRFSLYPNDLIRIEFPREKTIKTAVGEEIKIKDLFAYYQTIDSSNGGLSLVSHDNNFSLRSIGSRTLKRFEKYQVDVLGNIYKVRGEKRVGVASSSHSKAGETIRPL
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-05-13
Deposition Author(s): Shu, Y. , Zhao, Y.