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9BDW

Nf-kappab rela homo-dimer bound to gc-centric kappab dna

PDB DOI: 10.2210/pdb9bdw/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2024-04-12
Deposition Author(s): Biswas, T. , Ghosh, G. , Huang, D. , Shahabi, S. , Tsodikov, O.V.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.87 Å

Literature

Nf-kappab rela homo-dimer bound to gc-centric kappab dna

Biswas, T. , Ghosh, G. , Huang, D. , Shahabi, S. , Tsodikov, O.V.

Primary Citation of Related Structures: 9BDW


Proteins
Molecule Chains Sequence Length Organism Sequence
Transcription factor p65 A 287 Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGYYEADLCPDRSIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFHVPIEEQRGDYDLNAVRLCFQVTVRDPAGRPLLLTPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRKR
Transcription factor p65 B 287 Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGYYEADLCPDRSIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFHVPIEEQRGDYDLNAVRLCFQVTVRDPAGRPLLLTPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRKR

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*AP*CP*TP*GP*GP*GP*AP*AP*GP*TP*TP*CP*CP*AP*GP*TP*GP*AP*T)-3') c 19 NA ACTGGGAAGTTCCAGTGAT
DNA (5'-D(P*AP*TP*CP*AP*CP*TP*GP*GP*AP*AP*CP*TP*TP*CP*CP*CP*AP*GP*T)-3') d 19 NA ATCACTGGAACTTCCCAGT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2024-04-12
Deposition Author(s): Biswas, T. , Ghosh, G. , Huang, D. , Shahabi, S. , Tsodikov, O.V.