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9BCU

Cryo-em structure of thermococcus kodakarensis ftta-dependent transcription pre-termination complex containing 52 nt rna

PDB DOI: 10.2210/pdb9bcu/pdb

Classification: TRANSCRIPTION
Organism(s): Thermococcus Kodakarensis , Synthetic Construct

Deposited: 2024-04-09
Deposition Author(s): Ebright, R.H. , You, L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.2 Å

9bcu
Literature

Cryo-em structure of thermococcus kodakarensis ftta-dependent transcription pre-termination complex containing 52 nt rna

Ebright, R.H. , You, L.

Primary Citation of Related Structures: 9BCU


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-directed RNA polymerase subunit A' A 906 Thermococcus Kodakarensis , Synthetic Construct MQSMKKVIGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGARAGECPGHFGHIELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYMQKFEVMGDRKGAVDKLIKEIHKKAKERMVCPHCGAPQFPIKFERPTIYWELRKDEEGNEYKHRMMPSEVRDRLEKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTMRPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPLAVAMELTVPEKVTEFNYEKLKQRVLNGPEKYPGANYVIDPEGRRIRLMESNRELIAEKLDIGWTVERHLEDGDVVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLPVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFTRYEVEQMLMFAGMDVNELPEPDKYENGEPLWSGKTIFSLLLPDDLTIWYRNKLCDEPERCEALEKLIEEKLIPDPEEVRKLAYDGFVYIQNGKLLSGAVDKKAYGREDGKLLDIIVREYGVERARQFLDQVTKLTIWVITHKGFTTAIDDEDLPQEAIDRIHEIIREAEEKVQRLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGKVAERYLGMNNHAVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRGRVLTHFKPGDLGARARGFVTNSYKSGLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQFKYGEDGVDPMKSWQGKTVDVDRVIVRTLLKMRGGGE
DNA-directed RNA polymerase subunit N N 65 Thermococcus Kodakarensis , Synthetic Construct MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVMVYKVY
DNA-directed RNA polymerase subunit P P 49 Thermococcus Kodakarensis , Synthetic Construct MATAVYRCAKCGKEVELDLATAREVRCPYCGSKILYKPRPRVARRVKAI
Transcription elongation factor Spt5 G 152 Thermococcus Kodakarensis , Synthetic Construct MAEGKIFTVSVTVGQETTTANLIYSKAKTYNLPLYAILSPSKVKGYIFIEAPNKSAVEEAIRGIRHAKRVLPGEIPFSEIEHFLEEKPAVSGFEPGDIVELIAGPFKGEKAKVVRVDESKDEIVVELVSSVVPIPVTVRGEYVRLISKRQKE
Transcription elongation factor Spt4 I 73 Thermococcus Kodakarensis , Synthetic Construct HHHHHHMAKERACRHCHYITTEDRCPVCGSRDLSDDWFDLVIVLDVESRIAKKLRESIPEAAKVPGKYAIRVR
Transcription termination factor FttA J 648 Thermococcus Kodakarensis , Synthetic Construct MIRRETFVDDILKEIREIIVQMVPREAGITDVEFEGPELVIYVKNPEAMMKDGELIKNLAKVLKKRISVRPDPDILLPPEKAEELIKQLVPPEAEITNISFDPSVGEVLIEARKPGLVIGKNGETLRLITQKVHWAPRVVRTPPIQSQTIYSIRSILQTESKDRRKFLRQVGRNIYRKSEYKSRWIRITGLGGFREVGRSALLVQTDESYVLVDFGVNIAALKDPTKAYPHFDAPEFRYVLDEGLLDAIIITHAALDHSGMLPYLFRYKLFDGPIYTTPPTRDLMTLLQQDFIEIQHMNGVEPLYRPKDIKEVIKHTITLDYGEVRDIAPDIRLTLHNAGHILGSSIVHLHIGNGLHNIAITGDFKFIPTRLFEPAVSRFPRLETLVMESTYGGSNDYQMPREEAEKRLIEVIHQTLKRGGKVLIPAMAVGRAQEIMMVLEEYARVGGIEVPIYLDGMIWEATAIHTAYPEYLSKHIREQIFHEGYNPFLNPIFKSVANSRERQDIIDSGEPAIIIATSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTLGRQVQRGLREIPIVGEDGRTEVINVNMEVHTIDGFSGAADRRELMSYVARVRPRPERIITVHGEAHKCLDLSSSIHKKFGISTRAPNNLDAIRLK
Transcription termination factor FttA M 648 Thermococcus Kodakarensis , Synthetic Construct MIRRETFVDDILKEIREIIVQMVPREAGITDVEFEGPELVIYVKNPEAMMKDGELIKNLAKVLKKRISVRPDPDILLPPEKAEELIKQLVPPEAEITNISFDPSVGEVLIEARKPGLVIGKNGETLRLITQKVHWAPRVVRTPPIQSQTIYSIRSILQTESKDRRKFLRQVGRNIYRKSEYKSRWIRITGLGGFREVGRSALLVQTDESYVLVDFGVNIAALKDPTKAYPHFDAPEFRYVLDEGLLDAIIITHAALDHSGMLPYLFRYKLFDGPIYTTPPTRDLMTLLQQDFIEIQHMNGVEPLYRPKDIKEVIKHTITLDYGEVRDIAPDIRLTLHNAGHILGSSIVHLHIGNGLHNIAITGDFKFIPTRLFEPAVSRFPRLETLVMESTYGGSNDYQMPREEAEKRLIEVIHQTLKRGGKVLIPAMAVGRAQEIMMVLEEYARVGGIEVPIYLDGMIWEATAIHTAYPEYLSKHIREQIFHEGYNPFLNPIFKSVANSRERQDIIDSGEPAIIIATSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTLGRQVQRGLREIPIVGEDGRTEVINVNMEVHTIDGFSGAADRRELMSYVARVRPRPERIITVHGEAHKCLDLSSSIHKKFGISTRAPNNLDAIRLK
DNA-directed RNA polymerase subunit B B 1123 Thermococcus Kodakarensis , Synthetic Construct MSRGVTVTEPTLTPDELWLVMESYWKEKGFVRQHLDSYNAFIDHGLQDVVNEFGEVVPDIPNFKVKFGKIRIGQPEFQEAQGQRRPLYPMDARIRNLTYSAPLYLEMIPVVNGIEQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLVERDERQNKVVAKVFSYRHGYRALITVERKKDGILYVTIPNVPKPVKFVYVMRALGLLTDKEIVEAVSDDPRIQQVLFDNLEDASDISTQEEALDYIGRLALPGQPKEYRLRRAEHIIDNNLLPHMGVDPENRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLKDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIEHALATGSWPGGRTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGIPEREVREYLMKMGVVPIEERRPAPGLYRVYLNGVLIGTVEDGRKLVERIRADRRAGKISDVINVALYEDEEVKEVYINSDDGRVRRPLIVVENGKPKLTREHVEGIKNGTLTWSDLIRMGVIEYLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPASLVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEDRPAGQNFVVAVLSYHGYNMEDAVIINKASIERGLARSTFFRTYEAEEKRYLGGQKDNFEVPSPNIQGYLGEKYYRHLDEDGLIFPESKVEGKDVLVGRTSPPRFIEEQSSLGSMVLQGRRETSVTVRPSEKGVVDKVIVTETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLTGRRVDGTAFIGEPEEKLRKELEELGFKHSGREIMYDGITGRRLEADIFIGVIYYQRLHHMVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCESCGHLALEDKRRGKVYCPVCGEDERISKVEMSYAFKLLLDELKAMVIRPSLRLKDRV
DNA-directed RNA polymerase subunit A"" C 391 Thermococcus Kodakarensis , Synthetic Construct MVAEKTIKSMVSKAELPDNIKEELYAKLIEYNEKYKLKKDEIQAIIDETVREYQKALIEPGEAVGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLPRIIEIVDARKNPSTPIMTVYLDEEHRYDRDKALEVARRIEGTTLENLAREETIDILNMEYVVEIDPERLEKAGLDMEKVVRKLTGSFKSAEFEAEGYTLVVRPKKVTKLSDLRKIAEKVKKHRLKGLSGVGKTIIRKEGDEYVIYTEGSNFKQVLKVPGVDPTRTRTNNIWEIAEVLGIEAARNAIIDEIVSTMREQGLEVDVRHIMLVADMMTLDGVIRPIGRHGIVGEKASVLARAAFEITTQHLFAAAERGEVDPLNGVVENVLIGQPVPVGTGIVKLAMSLPLRPKRE
DNA-directed RNA polymerase subunit D D 261 Thermococcus Kodakarensis , Synthetic Construct MPMVEFKILEKRPDSIKFIVSGVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDEIIAHRLAMIPLTTPHERFSLDALELDDYTVTLSLEAEGPGMVYSGDLKSSDGDVKPANPNIPIVKLAEGQRLTFNAYARLGRGKDHAKWQPGFVYYKYLTKIHVSKDVPDWEELKELAERRGLPVEESDEEIVITTIKAFYLPRKFEEHMGKGIREEIVPGSFVFTVETNGELPVEEIVSIALKILMRKSDRFINELHKLAD
DNA-directed RNA polymerase subunit E E 190 Thermococcus Kodakarensis , Synthetic Construct MYKLLKVKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVVLAILDVEEISEGVIVPGDGATYHEAIFNVLVWEPRNQEVVEGEVVEMMPYGAFIRIGPMDGLVHISQLMDDYVVFDEKNRQFIGKETNRVLKLGDYVRARIIGVSVKSRVIRENKINMTMRQPGLGKFEWIEKEKKKAKEESKGE
DNA-directed RNA polymerase subunit F F 122 Thermococcus Kodakarensis , Synthetic Construct MIGRKKLEEHYITIAEAKELLERRHAEGLAENPEEPMFYEARVSLEHAERFAKLKPEQARELKEKLMGLFDWINERIAAKLVDILPEDYLDIRVIFAKEEYMPTPEEAEEIIKVIDEYRPLE
DNA-directed RNA polymerase subunit H H 82 Thermococcus Kodakarensis , Synthetic Construct MAAKKEFNIFDHVLVPEHRILSEEEKEELLKKYRIRISQLPQIKASDPAVVALGAKPGDVIEIKRKSPTAGYYYYYRLVVED
DNA-directed RNA polymerase subunit K K 60 Thermococcus Kodakarensis , Synthetic Construct MVVVFRYTRFEKARIIGARALQIAMGAPVLIDVPEGITPLQAALLEFEKGVIPITVIRPS
DNA-directed RNA polymerase subunit L L 94 Thermococcus Kodakarensis , Synthetic Construct MRIEVIRREENLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVVTDGKITPEKALEEAAQKIFDRAREVLEAWKAAIE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
non-template strand DNA 5 36 NA GAGTCATGATCATATTATTTTTTAGTCCAGACAGTG
template strand DNA 6 36 NA CACTGTCTGGACTGGTCGGCGCTATGATCATGACTC
RNA (29-MER) 7 52 NA UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUCAUUUGCGCCGACC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-04-09
Deposition Author(s): Ebright, R.H. , You, L.