Cryo-em structure of thermococcus kodakarensis ftta-dependent transcription pre-termination complex containing 52 nt rna
PDB DOI: 10.2210/pdb9bcu/pdb
Classification: TRANSCRIPTION Organism(s): Thermococcus Kodakarensis , Synthetic Construct
Deposited: 2024-04-09 Deposition Author(s): Ebright, R.H. , You, L.
Cryo-em structure of thermococcus kodakarensis ftta-dependent transcription pre-termination complex containing 52 nt rna
Primary Citation of Related Structures: 9BCU
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
DNA-directed RNA polymerase subunit A' | A | 906 | Thermococcus Kodakarensis , Synthetic Construct | MQSMKKVIGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGARAGECPGHFGHIELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYMQKFEVMGDRKGAVDKLIKEIHKKAKERMVCPHCGAPQFPIKFERPTIYWELRKDEEGNEYKHRMMPSEVRDRLEKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTMRPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPLAVAMELTVPEKVTEFNYEKLKQRVLNGPEKYPGANYVIDPEGRRIRLMESNRELIAEKLDIGWTVERHLEDGDVVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLPVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFTRYEVEQMLMFAGMDVNELPEPDKYENGEPLWSGKTIFSLLLPDDLTIWYRNKLCDEPERCEALEKLIEEKLIPDPEEVRKLAYDGFVYIQNGKLLSGAVDKKAYGREDGKLLDIIVREYGVERARQFLDQVTKLTIWVITHKGFTTAIDDEDLPQEAIDRIHEIIREAEEKVQRLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGKVAERYLGMNNHAVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRGRVLTHFKPGDLGARARGFVTNSYKSGLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQFKYGEDGVDPMKSWQGKTVDVDRVIVRTLLKMRGGGE |
DNA-directed RNA polymerase subunit N | N | 65 | Thermococcus Kodakarensis , Synthetic Construct | MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVMVYKVY |
DNA-directed RNA polymerase subunit P | P | 49 | Thermococcus Kodakarensis , Synthetic Construct | MATAVYRCAKCGKEVELDLATAREVRCPYCGSKILYKPRPRVARRVKAI |
Transcription elongation factor Spt5 | G | 152 | Thermococcus Kodakarensis , Synthetic Construct | MAEGKIFTVSVTVGQETTTANLIYSKAKTYNLPLYAILSPSKVKGYIFIEAPNKSAVEEAIRGIRHAKRVLPGEIPFSEIEHFLEEKPAVSGFEPGDIVELIAGPFKGEKAKVVRVDESKDEIVVELVSSVVPIPVTVRGEYVRLISKRQKE |
Transcription elongation factor Spt4 | I | 73 | Thermococcus Kodakarensis , Synthetic Construct | HHHHHHMAKERACRHCHYITTEDRCPVCGSRDLSDDWFDLVIVLDVESRIAKKLRESIPEAAKVPGKYAIRVR |
Transcription termination factor FttA | J | 648 | Thermococcus Kodakarensis , Synthetic Construct | MIRRETFVDDILKEIREIIVQMVPREAGITDVEFEGPELVIYVKNPEAMMKDGELIKNLAKVLKKRISVRPDPDILLPPEKAEELIKQLVPPEAEITNISFDPSVGEVLIEARKPGLVIGKNGETLRLITQKVHWAPRVVRTPPIQSQTIYSIRSILQTESKDRRKFLRQVGRNIYRKSEYKSRWIRITGLGGFREVGRSALLVQTDESYVLVDFGVNIAALKDPTKAYPHFDAPEFRYVLDEGLLDAIIITHAALDHSGMLPYLFRYKLFDGPIYTTPPTRDLMTLLQQDFIEIQHMNGVEPLYRPKDIKEVIKHTITLDYGEVRDIAPDIRLTLHNAGHILGSSIVHLHIGNGLHNIAITGDFKFIPTRLFEPAVSRFPRLETLVMESTYGGSNDYQMPREEAEKRLIEVIHQTLKRGGKVLIPAMAVGRAQEIMMVLEEYARVGGIEVPIYLDGMIWEATAIHTAYPEYLSKHIREQIFHEGYNPFLNPIFKSVANSRERQDIIDSGEPAIIIATSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTLGRQVQRGLREIPIVGEDGRTEVINVNMEVHTIDGFSGAADRRELMSYVARVRPRPERIITVHGEAHKCLDLSSSIHKKFGISTRAPNNLDAIRLK |
Transcription termination factor FttA | M | 648 | Thermococcus Kodakarensis , Synthetic Construct | MIRRETFVDDILKEIREIIVQMVPREAGITDVEFEGPELVIYVKNPEAMMKDGELIKNLAKVLKKRISVRPDPDILLPPEKAEELIKQLVPPEAEITNISFDPSVGEVLIEARKPGLVIGKNGETLRLITQKVHWAPRVVRTPPIQSQTIYSIRSILQTESKDRRKFLRQVGRNIYRKSEYKSRWIRITGLGGFREVGRSALLVQTDESYVLVDFGVNIAALKDPTKAYPHFDAPEFRYVLDEGLLDAIIITHAALDHSGMLPYLFRYKLFDGPIYTTPPTRDLMTLLQQDFIEIQHMNGVEPLYRPKDIKEVIKHTITLDYGEVRDIAPDIRLTLHNAGHILGSSIVHLHIGNGLHNIAITGDFKFIPTRLFEPAVSRFPRLETLVMESTYGGSNDYQMPREEAEKRLIEVIHQTLKRGGKVLIPAMAVGRAQEIMMVLEEYARVGGIEVPIYLDGMIWEATAIHTAYPEYLSKHIREQIFHEGYNPFLNPIFKSVANSRERQDIIDSGEPAIIIATSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTLGRQVQRGLREIPIVGEDGRTEVINVNMEVHTIDGFSGAADRRELMSYVARVRPRPERIITVHGEAHKCLDLSSSIHKKFGISTRAPNNLDAIRLK |
DNA-directed RNA polymerase subunit B | B | 1123 | Thermococcus Kodakarensis , Synthetic Construct | MSRGVTVTEPTLTPDELWLVMESYWKEKGFVRQHLDSYNAFIDHGLQDVVNEFGEVVPDIPNFKVKFGKIRIGQPEFQEAQGQRRPLYPMDARIRNLTYSAPLYLEMIPVVNGIEQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLVERDERQNKVVAKVFSYRHGYRALITVERKKDGILYVTIPNVPKPVKFVYVMRALGLLTDKEIVEAVSDDPRIQQVLFDNLEDASDISTQEEALDYIGRLALPGQPKEYRLRRAEHIIDNNLLPHMGVDPENRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLKDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIEHALATGSWPGGRTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGIPEREVREYLMKMGVVPIEERRPAPGLYRVYLNGVLIGTVEDGRKLVERIRADRRAGKISDVINVALYEDEEVKEVYINSDDGRVRRPLIVVENGKPKLTREHVEGIKNGTLTWSDLIRMGVIEYLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPASLVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEDRPAGQNFVVAVLSYHGYNMEDAVIINKASIERGLARSTFFRTYEAEEKRYLGGQKDNFEVPSPNIQGYLGEKYYRHLDEDGLIFPESKVEGKDVLVGRTSPPRFIEEQSSLGSMVLQGRRETSVTVRPSEKGVVDKVIVTETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLTGRRVDGTAFIGEPEEKLRKELEELGFKHSGREIMYDGITGRRLEADIFIGVIYYQRLHHMVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCESCGHLALEDKRRGKVYCPVCGEDERISKVEMSYAFKLLLDELKAMVIRPSLRLKDRV |
DNA-directed RNA polymerase subunit A"" | C | 391 | Thermococcus Kodakarensis , Synthetic Construct | MVAEKTIKSMVSKAELPDNIKEELYAKLIEYNEKYKLKKDEIQAIIDETVREYQKALIEPGEAVGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLPRIIEIVDARKNPSTPIMTVYLDEEHRYDRDKALEVARRIEGTTLENLAREETIDILNMEYVVEIDPERLEKAGLDMEKVVRKLTGSFKSAEFEAEGYTLVVRPKKVTKLSDLRKIAEKVKKHRLKGLSGVGKTIIRKEGDEYVIYTEGSNFKQVLKVPGVDPTRTRTNNIWEIAEVLGIEAARNAIIDEIVSTMREQGLEVDVRHIMLVADMMTLDGVIRPIGRHGIVGEKASVLARAAFEITTQHLFAAAERGEVDPLNGVVENVLIGQPVPVGTGIVKLAMSLPLRPKRE |
DNA-directed RNA polymerase subunit D | D | 261 | Thermococcus Kodakarensis , Synthetic Construct | MPMVEFKILEKRPDSIKFIVSGVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDEIIAHRLAMIPLTTPHERFSLDALELDDYTVTLSLEAEGPGMVYSGDLKSSDGDVKPANPNIPIVKLAEGQRLTFNAYARLGRGKDHAKWQPGFVYYKYLTKIHVSKDVPDWEELKELAERRGLPVEESDEEIVITTIKAFYLPRKFEEHMGKGIREEIVPGSFVFTVETNGELPVEEIVSIALKILMRKSDRFINELHKLAD |
DNA-directed RNA polymerase subunit E | E | 190 | Thermococcus Kodakarensis , Synthetic Construct | MYKLLKVKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVVLAILDVEEISEGVIVPGDGATYHEAIFNVLVWEPRNQEVVEGEVVEMMPYGAFIRIGPMDGLVHISQLMDDYVVFDEKNRQFIGKETNRVLKLGDYVRARIIGVSVKSRVIRENKINMTMRQPGLGKFEWIEKEKKKAKEESKGE |
DNA-directed RNA polymerase subunit F | F | 122 | Thermococcus Kodakarensis , Synthetic Construct | MIGRKKLEEHYITIAEAKELLERRHAEGLAENPEEPMFYEARVSLEHAERFAKLKPEQARELKEKLMGLFDWINERIAAKLVDILPEDYLDIRVIFAKEEYMPTPEEAEEIIKVIDEYRPLE |
DNA-directed RNA polymerase subunit H | H | 82 | Thermococcus Kodakarensis , Synthetic Construct | MAAKKEFNIFDHVLVPEHRILSEEEKEELLKKYRIRISQLPQIKASDPAVVALGAKPGDVIEIKRKSPTAGYYYYYRLVVED |
DNA-directed RNA polymerase subunit K | K | 60 | Thermococcus Kodakarensis , Synthetic Construct | MVVVFRYTRFEKARIIGARALQIAMGAPVLIDVPEGITPLQAALLEFEKGVIPITVIRPS |
DNA-directed RNA polymerase subunit L | L | 94 | Thermococcus Kodakarensis , Synthetic Construct | MRIEVIRREENLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVVTDGKITPEKALEEAAQKIFDRAREVLEAWKAAIE |
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-04-09 Deposition Author(s): Ebright, R.H. , You, L.