PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

9B3P

The cryo-em structure of the h2a.z-h3.3 double-variant nucleosome

PDB DOI: 10.2210/pdb9b3p/pdb

Classification: STRUCTURAL PROTEIN/DNA
Organism(s): Homo Sapiens , Mus Musculus , Synthetic Construct , Xenopus Laevis

Deposited: 2024-03-19
Deposition Author(s): Sokolova, V. , Tan, D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.0 Å

Literature

The cryo-em structure of the h2a.z-h3.3 double-variant nucleosome

Sokolova, V. , Tan, D.

Primary Citation of Related Structures: 9B3P


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.3 A 136 Homo Sapiens , Mus Musculus , Synthetic Construct , Xenopus Laevis MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.3 E 136 Homo Sapiens , Mus Musculus , Synthetic Construct , Xenopus Laevis MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 103 Homo Sapiens , Mus Musculus , Synthetic Construct , Xenopus Laevis MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 103 Homo Sapiens , Mus Musculus , Synthetic Construct , Xenopus Laevis MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A.Z C 128 Homo Sapiens , Mus Musculus , Synthetic Construct , Xenopus Laevis MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV
Histone H2A.Z G 128 Homo Sapiens , Mus Musculus , Synthetic Construct , Xenopus Laevis MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV
Histone H2B 1.1 D 126 Homo Sapiens , Mus Musculus , Synthetic Construct , Xenopus Laevis MPEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKSRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B 1.1 H 126 Homo Sapiens , Mus Musculus , Synthetic Construct , Xenopus Laevis MPEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKSRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (128-MER) i 147 NA ACAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAG
DNA (128-MER) j 167 NA ATCCCGCCCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTGTGCATGACTAGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-03-19
Deposition Author(s): Sokolova, V. , Tan, D.