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9B2C

Structure of the porcine deltacoronavirus (pdcov) receptor-binding domain bound to the pd33 antibody fab fragment and the kappa light chain nanobody

PDB DOI: 10.2210/pdb9b2c/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Lama Glama , Mus Sp. , Porcine Deltacoronavirus

Deposited: 2024-03-14
Deposition Author(s): Park, Y.J. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Veesler, D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.0 Å

9b2c
Literature

Structure of the porcine deltacoronavirus (pdcov) receptor-binding domain bound to the pd33 antibody fab fragment and the kappa light chain nanobody

Park, Y.J. , Seattle Structural Genomics Center For Infectious Disease (Ssgcid) , Veesler, D.

Primary Citation of Related Structures: 9B2C


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike glycoprotein A 163 Lama Glama , Mus Sp. , Porcine Deltacoronavirus MGILPSPGMPALLSLVSLLSVLLMGCVAETGTPELEVVQLNISAHMDFGEARLDSVTINGNTSYCVTKPYFRLETNFMCTGCTMNLRTDTCSFDLSAVNNGMSFSQFCLSTESGACEMKIIVTYVWNYLLRQRLYVTAVEGQTHTGLVPRGSGGSHHHHHHHH
PD33 Fab kappa light chain L 219 Lama Glama , Mus Sp. , Porcine Deltacoronavirus DIVMTQSPLSLPVTLGQPASISCRSSQSLVYSDGNTFLNWFQQRPGQSPRRLIYKVSNRDSGVPDRFSGSGSGTDFTLRISRVEAEDVGFYYCMQGTHWPPTFGPGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Kappa light chain nanobody N 159 Lama Glama , Mus Sp. , Porcine Deltacoronavirus MKKTAIAIAVALAGFATVAQAAPMGSQVQLQESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVAVARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTVSSHHHHHHHHEPEA
PD33 Fab heavy chain H 222 Lama Glama , Mus Sp. , Porcine Deltacoronavirus EVQLVESGGGLVQPGGSLRLSCAASGFTFSHYTMNWVRQAPGRGLEWVSSITTSSNFIYYADSVKGRFTISRDNTKNSLYLQMNSLSAEDTAVYFCARGGWELSYFDFWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
Experimental Data

Method: ELECTRON MICROSCOPY