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FASTA Sequence PDB Format mmCIF Format
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9B24

Wt strain gidb mutant mycobacterial ribosome

PDB DOI: 10.2210/pdb9b24/pdb

Classification: RIBOSOME
Organism(s): Mycolicibacterium Smegmatis

Deposited: 2024-03-14
Deposition Author(s): Chen, Y. , Fraser, J.S. , Javid, B. , Young, I.D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.47 Å

9b24
Literature

Wt strain gidb mutant mycobacterial ribosome

Chen, Y. , Fraser, J.S. , Javid, B. , Young, I.D.

Primary Citation of Related Structures: 9B24


Proteins
Molecule Chains Sequence Length Organism Sequence
Large ribosomal subunit protein uL3 A 217 Mycolicibacterium Smegmatis MARKGILGTKLGMTQVFDENNKVVPVTVVKAGPNVVTRIRTTERDGYSAVQLAYGEISPRKVIKPVAGQFAAAGVNPRRHVAELRLDDEAAVAEYEVGQELTAEIFSDGAYVDVTGTSKGKGFAGTMKRHGFRGQGAAHGAQAVHRRPGSIGGCATPGRVFKGTRMSGRMGNDRVTTQNLKVHKVDAENGVLLIKGAIPGRNGGLVVVRSAIKRGEK
Large ribosomal subunit protein uL18 K 127 Mycolicibacterium Smegmatis MAHKPVGQNISEVRRNARLRRHARLRKKVAGTAEVPRLVVNRSARHIHVQLVNDLNGTTLAAASSIEADVRAIDGDKKAHSVRVGQLIAERAKAAGVETVVFDRGGYTYGGRIAALADAAREAGLKF
Large ribosomal subunit protein bL19 L 113 Mycolicibacterium Smegmatis MNTLDFVDQASLRDDIPTFSPGDTVNVHVKVIEGSKERIQVFKGVVIRRQGGGISETFTVRKESYGVGVERTFPVHSPNIDHIDVLTRGDVRRAKLYYLRELRGKKAKIKEKR
Large ribosomal subunit protein bL20 M 129 Mycolicibacterium Smegmatis MARVKRALNAQKKRRTVLKASKGYRGQRSRLYRKAKEQQLHSLTYAYRDRRARKGEFRKLWISRINAAARANDITYNRLIQGLKAAGVEVDRKNLAELAVSDPAAFTALVDVARAALPEDVNAPSGEAA
Large ribosomal subunit protein bL21 N 103 Mycolicibacterium Smegmatis MATYAIVKTGGKQYKVAAGDVVKVEKLDSEPGASVSLPVALVVDGANVTSKADDLAKVAVTAEVLEHTKGPKIRIHKFKNKTGYHKRQGHRQQLTVLKVTGIK
Large ribosomal subunit protein uL22 O 153 Mycolicibacterium Smegmatis MSTVTEFPSATAKARYVRVSATKARRVIDLVRGKSVEEALDILRWAPQAASEPVAKVIASAAANAQNNEGLDPSTLVVATVYADEGPTAKRIRPRAQGRAFRIRKRTSHITVIVESRPPKQKGASAASARSRRAQGSKAAATKKSAETKEGSE
Large ribosomal subunit protein uL23 P 100 Mycolicibacterium Smegmatis MATITDPRDIILAPVISEKSYGLIEDNVYTFVVHPDSNKTQIKIAIEKIFDVKVDSVNTANRQGKRKRTRTGFGKRKSTKRAIVKLAAGSKPIDLFGAPA
Large ribosomal subunit protein uL24 Q 105 Mycolicibacterium Smegmatis MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSANERGASSGGIVTQEAPIHVSNVMVVDSDGKPTRVGYRIDDETGKKVRIAKTNGKDI
Large ribosomal subunit protein bL25 R 215 Mycolicibacterium Smegmatis MAKTANIPNKLTANVRTRTGKGASRQARRDGKVPAVLYGHGTDPQHLELNARDFAAVLRSHGTNAILTLDIEGTEQLALTKALDVHPIRRNIQHADLLVVQRGEKVTVEVTVLVEGDATPGTLVTQDANTIEIEAEALSIPEQLTVSVEGVEAGTQITAGQISLPEGVNLISDPELLVVNVVEAPSAEALEEEGAGETGAAEAPAEEAPAEEPAE
Large ribosomal subunit protein bL28 T 64 Mycolicibacterium Smegmatis MAAVCDICGKGPGFGKSVSHSHRRTSRRWNPNIQPVRAVTRPGGNKQRINACTSCIKAGKVSRA
Large ribosomal subunit protein uL10 V 175 Mycolicibacterium Smegmatis MAKADKATAVADIAEQFKASTATVVTEYRGLTVANLAELRRALGDSATYTVAKNTLVKRAASEAGIEGLDELFAGPTAIAFVKGEAVDAAKAIKKFAKDNKALVIKGGYMDGKALSVADVEKIADLESREVLLAKLAGAMKGNLSKAAGLFNAPASQVARLAAALQEKKAGEEAA
Large ribosomal subunit protein uL5 C 187 Mycolicibacterium Smegmatis MTTTEKALPRLKQRYREEIREALQQEFNYANVMQIPGVVKVVVNMGVGDAARDAKLINGAINDLALITGQKPEVRRARKSIAQFKLREGMPIGARVTLRGDRMWEFLDRLISIALPRIRDFRGLSPKQFDGTGNYTFGLNEQSMFHEIDVDSIDRPRGMDITVVTTATNDAEGRALLRALGFPFKEN
Large ribosomal subunit protein bL33A Y 55 Mycolicibacterium Smegmatis MASSTDVRPKITLACEVCKHRNYITKKNRRNDPDRLEIKKFCPNCGTHQPHKESR
Large ribosomal subunit protein uL29 U 77 Mycolicibacterium Smegmatis MAVGTTPGELRELTDDELKDKLRESKEELFNLRFQMATGQLSNNRRLRTVRQEIARVYTVLRERELGLASGPAGEES
Large ribosomal subunit protein bL34 Z 47 Mycolicibacterium Smegmatis MAKGKRTFQPNNRRRARVHGFRLRMRTRAGRAIVANRRSKGRRALTA
Large ribosomal subunit protein uL4 B 215 Mycolicibacterium Smegmatis MTLKVDVKTPAGKTDGSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRARQGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNDRIHAVTELVEGQTPSTKSAKTFLGTLTENKKVLVVIGRTDEVGAKSVRNLPGVHVISPDQLNTYDVLNADDVVFSVEALNAYISANSKEGASV
Small ribosomal subunit protein uS4 D 201 Mycolicibacterium Smegmatis MARYTGPATRKSRRLGVDLVGGDQSFEKRPYPPGQHGRARIKESEYRQQLQEKQKARFSYGVMEKQFRRYYEEANRQPGKTGDNLLRILESRLDNVVYRAGLARTRRMARQLVSHGHFLVNGVKVDIPSYRVSQYDIIDVKEKSLNTLPFQIARETAGERPIPSWLQVVGERQRILVHQLPERAQIDVPLTEQLIVELYSK
Small ribosomal subunit protein uS5 E 214 Mycolicibacterium Smegmatis MAEQAGAGSAQDNRGGRGRRDDRGGRGRDGGDKSNYIERVVSINRVSKVVKGGRRFSFTALVIVGDGKGMVGVGYGKAKEVPAAIAKGVEEARKNFFRVPLIGSTITHPVQGEAAAGVVMLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPIEDVAPAGMLKARRESEALAAAAAREGSA
Small ribosomal subunit protein bS6 F 96 Mycolicibacterium Smegmatis MRPYEIMVILDPTLDERTVAPSLETFLNVIRKDGGTVDKVDIWGRRRLAYEIAKHAEGIYAVIDVKAEPATVSELDRQLNLNESVLRTKVLRTDKH
Small ribosomal subunit protein uS7 G 156 Mycolicibacterium Smegmatis MPRKGPAPKRPLVNDPVYGSQLVTQLVNKVLLEGKKSLAERIVYGALEQAREKTGTDPVVTLKRALDNVKPALEVRSRRVGGATYQVPVEVRPDRSTTLALRWLVNFSRQRREKTMVERLANEILDASNGLGASVKRREDTHKMAEANRAFAHYRW
Small ribosomal subunit protein uS8 H 132 Mycolicibacterium Smegmatis MTMTDPIADFLTRLRNANSAYHDEVTLPHSKLKANIAEILKREGYISDYRTEDARVGKSLVVQLKYGPSRERSIAGLRRVSKPGLRVYAKSTNLPRVLGGLGVAIISTSSGLLTDRQAARQGVGGEVLAYVW
Small ribosomal subunit protein uS9 I 150 Mycolicibacterium Smegmatis MTDVTETEVVTESAEPREPVIIDRPIQTVGRRKEAVVRVRLVPGTGQFNLDGRTLENYFPNKVHQQLIKAPLVTVDRVDQFDIYAHLDGGGPSGQAGALRLAIARALILVQPEDRPALKKAGFLTRDPRAIERKKYGLKKARKAPQYSKR
Small ribosomal subunit protein uS10 J 101 Mycolicibacterium Smegmatis MAGQKIRIRLKAYDHEAIDASARKIVETVTRTGASVVGPVPLPTEKNVYCVIRSPHKYKDSREHFEMRTHKRLIDILDPTPKTVDALMRIDLPASVDVNIQ
Large ribosomal subunit protein bL27 S 88 Mycolicibacterium Smegmatis MAHKKGASSSRNGRDSAAQRLGVKRFGGQVVKAGEILVRQRGTHFHPGVNVGRGGDDTLFALAPGAVEFGAKRGRKTVNIVPVARPEA
Large ribosomal subunit protein uL30 W 61 Mycolicibacterium Smegmatis MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEVGK
Large ribosomal subunit protein bL32 X 57 Mycolicibacterium Smegmatis MAVPKRRMSRANTRSRRAQWKAEAPGLVTVSVAGQQRKVPRRLLKAARLGLVDLDKR
Large ribosomal subunit protein bL35 1 64 Mycolicibacterium Smegmatis MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPTKRTRRLDGRTTVSAADNSRINKLLNG
50S ribosomal protein L36 2 37 Mycolicibacterium Smegmatis MKVNPSVKPICDKCRVIRRHGRVMVICSDPRHKQRQG

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
23S rRNA part 4 81 NA ACGGUUUGUGUAGGAUAGGUGGGAGACUGUGAAGCUCACACGCCAGUGUGGGUGGAGUCGUUGUUGAAAUACCACUCUGAU
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-03-14
Deposition Author(s): Chen, Y. , Fraser, J.S. , Javid, B. , Young, I.D.