9B24
Wt strain gidb mutant mycobacterial ribosome
PDB DOI: 10.2210/pdb9b24/pdb
Classification: RIBOSOME Organism(s): Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165)
Deposited: 2024-03-14 Deposition Author(s): Chen, Y. , Fraser, J.S. , Javid, B. , Young, I.D.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.47 Å
Wt strain gidb mutant mycobacterial ribosome
Chen, Y. , Fraser, J.S. , Javid, B. , Young, I.D.
Primary Citation of Related Structures: 9B24
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Large ribosomal subunit protein uL3 | A | 217 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MARKGILGTKLGMTQVFDENNKVVPVTVVKAGPNVVTRIRTTERDGYSAVQLAYGEISPRKVIKPVAGQFAAAGVNPRRHVAELRLDDEAAVAEYEVGQELTAEIFSDGAYVDVTGTSKGKGFAGTMKRHGFRGQGAAHGAQAVHRRPGSIGGCATPGRVFKGTRMSGRMGNDRVTTQNLKVHKVDAENGVLLIKGAIPGRNGGLVVVRSAIKRGEK |
| Large ribosomal subunit protein uL18 | K | 127 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MAHKPVGQNISEVRRNARLRRHARLRKKVAGTAEVPRLVVNRSARHIHVQLVNDLNGTTLAAASSIEADVRAIDGDKKAHSVRVGQLIAERAKAAGVETVVFDRGGYTYGGRIAALADAAREAGLKF |
| Large ribosomal subunit protein bL19 | L | 113 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MNTLDFVDQASLRDDIPTFSPGDTVNVHVKVIEGSKERIQVFKGVVIRRQGGGISETFTVRKESYGVGVERTFPVHSPNIDHIDVLTRGDVRRAKLYYLRELRGKKAKIKEKR |
| Large ribosomal subunit protein bL20 | M | 129 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MARVKRALNAQKKRRTVLKASKGYRGQRSRLYRKAKEQQLHSLTYAYRDRRARKGEFRKLWISRINAAARANDITYNRLIQGLKAAGVEVDRKNLAELAVSDPAAFTALVDVARAALPEDVNAPSGEAA |
| Large ribosomal subunit protein bL21 | N | 103 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MATYAIVKTGGKQYKVAAGDVVKVEKLDSEPGASVSLPVALVVDGANVTSKADDLAKVAVTAEVLEHTKGPKIRIHKFKNKTGYHKRQGHRQQLTVLKVTGIK |
| Large ribosomal subunit protein uL22 | O | 153 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MSTVTEFPSATAKARYVRVSATKARRVIDLVRGKSVEEALDILRWAPQAASEPVAKVIASAAANAQNNEGLDPSTLVVATVYADEGPTAKRIRPRAQGRAFRIRKRTSHITVIVESRPPKQKGASAASARSRRAQGSKAAATKKSAETKEGSE |
| Large ribosomal subunit protein uL23 | P | 100 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MATITDPRDIILAPVISEKSYGLIEDNVYTFVVHPDSNKTQIKIAIEKIFDVKVDSVNTANRQGKRKRTRTGFGKRKSTKRAIVKLAAGSKPIDLFGAPA |
| Large ribosomal subunit protein uL24 | Q | 105 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSANERGASSGGIVTQEAPIHVSNVMVVDSDGKPTRVGYRIDDETGKKVRIAKTNGKDI |
| Large ribosomal subunit protein bL25 | R | 215 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MAKTANIPNKLTANVRTRTGKGASRQARRDGKVPAVLYGHGTDPQHLELNARDFAAVLRSHGTNAILTLDIEGTEQLALTKALDVHPIRRNIQHADLLVVQRGEKVTVEVTVLVEGDATPGTLVTQDANTIEIEAEALSIPEQLTVSVEGVEAGTQITAGQISLPEGVNLISDPELLVVNVVEAPSAEALEEEGAGETGAAEAPAEEAPAEEPAE |
| Large ribosomal subunit protein bL28 | T | 64 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MAAVCDICGKGPGFGKSVSHSHRRTSRRWNPNIQPVRAVTRPGGNKQRINACTSCIKAGKVSRA |
| Large ribosomal subunit protein uL10 | V | 175 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MAKADKATAVADIAEQFKASTATVVTEYRGLTVANLAELRRALGDSATYTVAKNTLVKRAASEAGIEGLDELFAGPTAIAFVKGEAVDAAKAIKKFAKDNKALVIKGGYMDGKALSVADVEKIADLESREVLLAKLAGAMKGNLSKAAGLFNAPASQVARLAAALQEKKAGEEAA |
| Large ribosomal subunit protein uL5 | C | 187 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MTTTEKALPRLKQRYREEIREALQQEFNYANVMQIPGVVKVVVNMGVGDAARDAKLINGAINDLALITGQKPEVRRARKSIAQFKLREGMPIGARVTLRGDRMWEFLDRLISIALPRIRDFRGLSPKQFDGTGNYTFGLNEQSMFHEIDVDSIDRPRGMDITVVTTATNDAEGRALLRALGFPFKEN |
| Large ribosomal subunit protein bL33A | Y | 55 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MASSTDVRPKITLACEVCKHRNYITKKNRRNDPDRLEIKKFCPNCGTHQPHKESR |
| Large ribosomal subunit protein uL29 | U | 77 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MAVGTTPGELRELTDDELKDKLRESKEELFNLRFQMATGQLSNNRRLRTVRQEIARVYTVLRERELGLASGPAGEES |
| Large ribosomal subunit protein bL34 | Z | 47 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MAKGKRTFQPNNRRRARVHGFRLRMRTRAGRAIVANRRSKGRRALTA |
| Large ribosomal subunit protein uL4 | B | 215 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MTLKVDVKTPAGKTDGSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRARQGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNDRIHAVTELVEGQTPSTKSAKTFLGTLTENKKVLVVIGRTDEVGAKSVRNLPGVHVISPDQLNTYDVLNADDVVFSVEALNAYISANSKEGASV |
| Small ribosomal subunit protein uS4 | D | 201 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MARYTGPATRKSRRLGVDLVGGDQSFEKRPYPPGQHGRARIKESEYRQQLQEKQKARFSYGVMEKQFRRYYEEANRQPGKTGDNLLRILESRLDNVVYRAGLARTRRMARQLVSHGHFLVNGVKVDIPSYRVSQYDIIDVKEKSLNTLPFQIARETAGERPIPSWLQVVGERQRILVHQLPERAQIDVPLTEQLIVELYSK |
| Small ribosomal subunit protein uS5 | E | 214 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MAEQAGAGSAQDNRGGRGRRDDRGGRGRDGGDKSNYIERVVSINRVSKVVKGGRRFSFTALVIVGDGKGMVGVGYGKAKEVPAAIAKGVEEARKNFFRVPLIGSTITHPVQGEAAAGVVMLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPIEDVAPAGMLKARRESEALAAAAAREGSA |
| Small ribosomal subunit protein bS6 | F | 96 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MRPYEIMVILDPTLDERTVAPSLETFLNVIRKDGGTVDKVDIWGRRRLAYEIAKHAEGIYAVIDVKAEPATVSELDRQLNLNESVLRTKVLRTDKH |
| Small ribosomal subunit protein uS7 | G | 156 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MPRKGPAPKRPLVNDPVYGSQLVTQLVNKVLLEGKKSLAERIVYGALEQAREKTGTDPVVTLKRALDNVKPALEVRSRRVGGATYQVPVEVRPDRSTTLALRWLVNFSRQRREKTMVERLANEILDASNGLGASVKRREDTHKMAEANRAFAHYRW |
| Small ribosomal subunit protein uS8 | H | 132 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MTMTDPIADFLTRLRNANSAYHDEVTLPHSKLKANIAEILKREGYISDYRTEDARVGKSLVVQLKYGPSRERSIAGLRRVSKPGLRVYAKSTNLPRVLGGLGVAIISTSSGLLTDRQAARQGVGGEVLAYVW |
| Small ribosomal subunit protein uS9 | I | 150 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MTDVTETEVVTESAEPREPVIIDRPIQTVGRRKEAVVRVRLVPGTGQFNLDGRTLENYFPNKVHQQLIKAPLVTVDRVDQFDIYAHLDGGGPSGQAGALRLAIARALILVQPEDRPALKKAGFLTRDPRAIERKKYGLKKARKAPQYSKR |
| Small ribosomal subunit protein uS10 | J | 101 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MAGQKIRIRLKAYDHEAIDASARKIVETVTRTGASVVGPVPLPTEKNVYCVIRSPHKYKDSREHFEMRTHKRLIDILDPTPKTVDALMRIDLPASVDVNIQ |
| Large ribosomal subunit protein bL27 | S | 88 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MAHKKGASSSRNGRDSAAQRLGVKRFGGQVVKAGEILVRQRGTHFHPGVNVGRGGDDTLFALAPGAVEFGAKRGRKTVNIVPVARPEA |
| Large ribosomal subunit protein uL30 | W | 61 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEVGK |
| Large ribosomal subunit protein bL32 | X | 57 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MAVPKRRMSRANTRSRRAQWKAEAPGLVTVSVAGQQRKVPRRLLKAARLGLVDLDKR |
| Large ribosomal subunit protein bL35 | 1 | 64 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPTKRTRRLDGRTTVSAADNSRINKLLNG |
| 50S ribosomal protein L36 | 2 | 37 | Thermoplasma Acidophilum (Strain Atcc 25905 / Dsm 1728 / Jcm 9062 / Nbrc 15155 / Amrc-C165) | MKVNPSVKPICDKCRVIRRHGRVMVICSDPRHKQRQG |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 23S rRNA part | 4 | 81 | NA | ACGGUUUGUGUAGGAUAGGUGGGAGACUGUGAAGCUCACACGCCAGUGUGGGUGGAGUCGUUGUUGAAAUACCACUCUGAU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-03-14 Deposition Author(s): Chen, Y. , Fraser, J.S. , Javid, B. , Young, I.D.