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FASTA Sequence PDB Format mmCIF Format
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9B1Y

Wt strain wt mycobacterial ribosome

PDB DOI: 10.2210/pdb9b1y/pdb

Classification: RIBOSOME
Organism(s): Mycolicibacterium Smegmatis

Deposited: 2024-03-14
Deposition Author(s): Chen, Y. , Fraser, J.S. , Javid, B. , Young, I.D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.47 Å

9b1y
Literature

Wt strain wt mycobacterial ribosome

Chen, Y. , Fraser, J.S. , Javid, B. , Young, I.D.

Primary Citation of Related Structures: 9B1Y


Proteins
Molecule Chains Sequence Length Organism Sequence
Large ribosomal subunit protein uL3 A 214 Mycolicibacterium Smegmatis ARKGILGTKLGMTQVFDENNKVVPVTVVKAGPNVVTRIRTTERDGYSAVQLAYGEISPRKVIKPVAGQFAAAGVNPRRHVAELRLDDEAAVAEYEVGQELTAEIFSDGAYVDVTGTSKGKGFAGTMKRHGFRGQGAAHGAQAVHRRPGSIGGCATPGRVFKGTRMSGRMGNDRVTTQNLKVHKVDAENGVLLIKGAIPGRNGGLVVVRSAIKRG
Large ribosomal subunit protein uL18 K 126 Mycolicibacterium Smegmatis AHKPVGQNISEVRRNARLRRHARLRKKVAGTAEVPRLVVNRSARHIHVQLVNDLNGTTLAAASSIEADVRAIDGDKKAHSVRVGQLIAERAKAAGVETVVFDRGGYTYGGRIAALADAAREAGLKF
Large ribosomal subunit protein bL19 L 113 Mycolicibacterium Smegmatis MNTLDFVDQASLRDDIPTFSPGDTVNVHVKVIEGSKERIQVFKGVVIRRQGGGISETFTVRKESYGVGVERTFPVHSPNIDHIDVLTRGDVRRAKLYYLRELRGKKAKIKEKR
Large ribosomal subunit protein bL20 M 124 Mycolicibacterium Smegmatis ARVKRALNAQKKRRTVLKASKGYRGQRSRLYRKAKEQQLHSLTYAYRDRRARKGEFRKLWISRINAAARANDITYNRLIQGLKAAGVEVDRKNLAELAVSDPAAFTALVDVARAALPEDVNAPS
Large ribosomal subunit protein bL21 N 100 Mycolicibacterium Smegmatis TYAIVKTGGKQYKVAAGDVVKVEKLDSEPGASVSLPVALVVDGANVTSKADDLAKVAVTAEVLEHTKGPKIRIHKFKNKTGYHKRQGHRQQLTVLKVTGI
50S ribosomal protein L22 O 114 Mycolicibacterium Smegmatis EFPSATAKARYVRVSATKARRVIDLVRGKSVEEALDILRWAPQAASEPVAKVIASAAANAQNNEGLDPSTLVVATVYADEGPTAKRIRPRAQGRAFRIRKRTSHITVIVESRPP
Large ribosomal subunit protein uL23 P 97 Mycolicibacterium Smegmatis ATITDPRDIILAPVISEKSYGLIEDNVYTFVVHPDSNKTQIKIAIEKIFDVKVDSVNTANRQGKRKRTRTGFGKRKSTKRAIVKLAAGSKPIDLFGA
Large ribosomal subunit protein uL24 Q 97 Mycolicibacterium Smegmatis MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSGGIVTQEAPIHVSNVMVVDSDGKPTRVGYRIDDETGKKVRIAKTNGKDI
Large ribosomal subunit protein bL25 R 192 Mycolicibacterium Smegmatis TANIPNKLTANVRTRTGKGASRQARRDGKVPAVLYGHGTDPQHLELNARDFAAVLRSHGTNAILTLDIEGTEQLALTKALDVHPIRRNIQHADLLVVQRGEKVTVEVTVLVEGDATPGTLVTQDANTIEIEAEALSIPEQLTVSVEGVEAGTQITAGQISLPEGVNLISDPELLVVNVVEAPSAEALEEEGA
Large ribosomal subunit protein bL28 T 63 Mycolicibacterium Smegmatis AAVCDICGKGPGFGKSVSHSHRRTSRRWNPNIQPVRAVTRPGGNKQRINACTSCIKAGKVSRA
Large ribosomal subunit protein uL10 V 126 Mycolicibacterium Smegmatis MAKADKATAVADIAEQFKASTATVVTEYRGLTVANLAELRRALGDSATYTVAKNTLVKRAASEAGIEGLDELFAGPTAIAFVKGEAVDAAKAIKKFAKDNKALVIKGGYMDGKALSVADVEKIADL
Large ribosomal subunit protein uL5 C 182 Mycolicibacterium Smegmatis KALPRLKQRYREEIREALQQEFNYANVMQIPGVVKVVVNMGVGDAARDAKLINGAINDLALITGQKPEVRRARKSIAQFKLREGMPIGARVTLRGDRMWEFLDRLISIALPRIRDFRGLSPKQFDGTGNYTFGLNEQSMFHEIDVDSIDRPRGMDITVVTTATNDAEGRALLRALGFPFKEN
Large ribosomal subunit protein bL33A Y 49 Mycolicibacterium Smegmatis DVRPKITLACEVCKHRNYITKKNRRNDPDRLEIKKFCPNCGTHQPHKES
Large ribosomal subunit protein uL29 U 64 Mycolicibacterium Smegmatis GTTPGELRELTDDELKDKLRESKEELFNLRFQMATGQLSNNRRLRTVRQEIARVYTVLRERELG
50S ribosomal protein L34 Z 46 Mycolicibacterium Smegmatis AKGKRTFQPNNRRRARVHGFRLRMRTRAGRAIVANRRSKGRRALTA
Large ribosomal subunit protein uL4 B 209 Mycolicibacterium Smegmatis TLKVDVKTPAGKTDGSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRARQGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNDRIHAVTELVEGQTPSTKSAKTFLGTLTENKKVLVVIGRTDEVGAKSVRNLPGVHVISPDQLNTYDVLNADDVVFSVEALNAYISANSK
Small ribosomal subunit protein uS4 D 200 Mycolicibacterium Smegmatis ARYTGPATRKSRRLGVDLVGGDQSFEKRPYPPGQHGRARIKESEYRQQLQEKQKARFSYGVMEKQFRRYYEEANRQPGKTGDNLLRILESRLDNVVYRAGLARTRRMARQLVSHGHFLVNGVKVDIPSYRVSQYDIIDVKEKSLNTLPFQIARETAGERPIPSWLQVVGERQRILVHQLPERAQIDVPLTEQLIVELYSK
Small ribosomal subunit protein uS5 E 180 Mycolicibacterium Smegmatis NYIERVVSINRVSKVVKGGRRFSFTALVIVGDGKGMVGVGYGKAKEVPAAIAKGVEEARKNFFRVPLIGSTITHPVQGEAAAGVVMLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPIEDVAPAGMLKARRESEALAAAAAREGSA
Small ribosomal subunit protein bS6 F 96 Mycolicibacterium Smegmatis MRPYEIMVILDPTLDERTVAPSLETFLNVIRKDGGTVDKVDIWGRRRLAYEIAKHAEGIYAVIDVKAEPATVSELDRQLNLNESVLRTKVLRTDKH
Small ribosomal subunit protein uS7 G 155 Mycolicibacterium Smegmatis PRKGPAPKRPLVNDPVYGSQLVTQLVNKVLLEGKKSLAERIVYGALEQAREKTGTDPVVTLKRALDNVKPALEVRSRRVGGATYQVPVEVRPDRSTTLALRWLVNFSRQRREKTMVERLANEILDASNGLGASVKRREDTHKMAEANRAFAHYRW
Small ribosomal subunit protein uS8 H 131 Mycolicibacterium Smegmatis TMTDPIADFLTRLRNANSAYHDEVTLPHSKLKANIAEILKREGYISDYRTEDARVGKSLVVQLKYGPSRERSIAGLRRVSKPGLRVYAKSTNLPRVLGGLGVAIISTSSGLLTDRQAARQGVGGEVLAYVW
Small ribosomal subunit protein uS9 I 126 Mycolicibacterium Smegmatis PIQTVGRRKEAVVRVRLVPGTGQFNLDGRTLENYFPNKVHQQLIKAPLVTVDRVDQFDIYAHLDGGGPSGQAGALRLAIARALILVQPEDRPALKKAGFLTRDPRAIERKKYGLKKARKAPQYSKR
Small ribosomal subunit protein uS10 J 99 Mycolicibacterium Smegmatis GQKIRIRLKAYDHEAIDASARKIVETVTRTGASVVGPVPLPTEKNVYCVIRSPHKYKDSREHFEMRTHKRLIDILDPTPKTVDALMRIDLPASVDVNIQ
Large ribosomal subunit protein bL27 S 79 Mycolicibacterium Smegmatis SSSRNGRDSAAQRLGVKRFGGQVVKAGEILVRQRGTHFHPGVNVGRGGDDTLFALAPGAVEFGAKRGRKTVNIVPVARP
Large ribosomal subunit protein uL30 W 59 Mycolicibacterium Smegmatis AELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEVG
Large ribosomal subunit protein bL32 X 54 Mycolicibacterium Smegmatis AVPKRRMSRANTRSRRAQWKAEAPGLVTVSVAGQQRKVPRRLLKAARLGLVDLD
Large ribosomal subunit protein bL35 1 63 Mycolicibacterium Smegmatis PKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPTKRTRRLDGRTTVSAADNSRINKLLNG
50S ribosomal protein L36 2 37 Mycolicibacterium Smegmatis MKVNPSVKPICDKCRVIRRHGRVMVICSDPRHKQRQG

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
23S rRNA fragment 4 81 NA ACGGUUUGUGUAGGAUAGGUGGGAGACUGUGAAGCUCACACGCCAGUGUGGGUGGAGUCGUUGUUGAAAUACCACUCUGAU
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-03-14
Deposition Author(s): Chen, Y. , Fraser, J.S. , Javid, B. , Young, I.D.