9AUF
Cas9d 20bp r-loop complex
PDB DOI: 10.2210/pdb9auf/pdb
Classification: DNA BINDING PROTEIN, RNA BINDING PROTEIN/DNA/RNA Organism(s): Deltaproteobacteria
Deposited: 2024-02-29 Deposition Author(s): Bravo, J.P.K. , Fregoso Ocampo, R. , Taylor, D.W.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.73 Å
Cas9d 20bp r-loop complex
Bravo, J.P.K. , Fregoso Ocampo, R. , Taylor, D.W.
Primary Citation of Related Structures: 9AUF
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| HNH nuclease domain-containing protein | A | 747 | Deltaproteobacteria | MERELVLGIDYGGKYTGLAVVDRRHNQVLYANRLKMRDDVAGILKDRRKQRGIRRTAQTKKKRLRELKNYLKSIGYNESTATFETVYSLAHKRGYDYADMPEEKTSEEIEAMDVEERKQWEKEKQEWEETKRNSRHRKEVVKDVHKAMIEGRATEEQIKRVERIFNKQYRPKRFNNRILTKCKVEDCGVNTPLRKNVRDLLIENIVRFFPIEQSEKDNLKDAVLDKNRREEVKSFFRKHKTDEHIRKQVYDIADNKLSGRTVFCKEHILEHTEHSKEERKVFRLAPSLKTKIENVLAVIKDEILPKFTVNKVVMESNNFDIAAKTQGKKRLAKEEYGKGPREGKETRKEALLRETDGRCIYCGKSIDISNAHDDHIFPRKAGGLNIFANLVACCAVCNENKKGRTPLESGISPKPEIIAFMKNDLKKKILEDARNINTVDFNKYMSHASIGWRYMRDRLRESAGNKKLPIERQSGIYTAYFRRWWGFKKERGNTLHHALDAVILASRKGYSDDGLVDMTLKPKYNKGGEFDPEKHLPEPIEFKMDKGSRGSALHDRNPLSYKKGIITRRFMVTEIECGKEDDVISETYREKLKEAFKRFDTKKGKCLTDKEAKEAGFCIKKNELVMSLKCSIKGTGPGQMIRINNNVFKTNVHNVGVDVYLDEKGKKKAYERKNPRLSKHFIEPPPQPNGRVSFTLKRRDMVTVEGEDAIYRIKKLGTSPTIEAVVGSDGKTRTVSATKLTKANSAE |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| sgRNA | b | 158 | NA | GACGCAUAAAGAUGAGACGCGUUACAGUUAAGGCUCUGAAAAGAGCCUUAAUUGUAAAACGCCUAUACAGUGAAGGGAUAUACGCUUGGGUUUGUCCAGCCUGAGCCUCUAUGCCAGAAAUGGCGCCUUCAUCGUGGGUUAGGACAUUUAAUUUUUUU |
| 3' Target Strand | c | 33 | NA | TCTCATCTTTATGCGTCAGCAGAGATTTCTGCT |
| Non-Target Strand | d | 55 | NA | AGCAGAAATCTCTGCTGACGCATAAAGATGAGACGCTGGAGTACAAACGTCAGCT |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-02-29 Deposition Author(s): Bravo, J.P.K. , Fregoso Ocampo, R. , Taylor, D.W.