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9ASI

Cryo-em structure of the active lactococcus lactis csm bound to target in pre-cleavage stage

PDB DOI: 10.2210/pdb9asi/pdb

Classification: RNA BINDING PROTEIN/RNA
Organism(s): Lactococcus Lactis Subsp. Lactis , Synthetic Construct

Deposited: 2024-02-25
Deposition Author(s): Goswami, H.N. , Li, H. , Wang, B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.79 Å

9asi
Literature

Cryo-em structure of the active lactococcus lactis csm bound to target in pre-cleavage stage

Goswami, H.N. , Li, H. , Wang, B.

Primary Citation of Related Structures: 9ASI


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated protein Csm4 B 297 Lactococcus Lactis Subsp. Lactis , Synthetic Construct MKIIKLYFESPVHFGEKRLSESKITFSADTLFSALMIEAVGLGKEDEFYQLASNNLVKFSDAFPFIDQYYYIPKPMFNLKLEKEDENPSKAFKKLLYVPIDSLEDYLSGGLDAYFERESFNLGKLALSEKVQQHDFKDSEPYNVGTFTFKENTGLYVLIEQTHPLLEELLENLQYSGIGGKRNSGYGKFKFEILEDSDIEDLFSAKGNRKILLSGALPKDAELEQALKNASYLLERRGGFVQSDTYATNLVKKQDLYVFKSGSTFENSFDGDIYQVGKKGNHPVYKYAKSFFLEVSV
CRISPR system Cms endoribonuclease Csm3 F 214 Lactococcus Lactis Subsp. Lactis , Synthetic Construct MKLVIEGTIVLKTGMHIGGSSDFSAIGAVDSPVVRDTLTRLPLIPGSSLKGKMRYLLAKELNNGILLNEPNNDQDEILRLFGSSEKDKIRRARLKFNDIKLSNLAELETFNVSSTEVKFENTINRKTAVANPRQIERVIAGSKFDFEIFYNLDDIKEVEKDFENIKQGFDLLEFDYLGGHGTRGSGRIAFENLSVITAVGNFEKINTLNEILGA
CRISPR system Cms endoribonuclease Csm3 H 214 Lactococcus Lactis Subsp. Lactis , Synthetic Construct MKLVIEGTIVLKTGMHIGGSSDFSAIGAVDSPVVRDTLTRLPLIPGSSLKGKMRYLLAKELNNGILLNEPNNDQDEILRLFGSSEKDKIRRARLKFNDIKLSNLAELETFNVSSTEVKFENTINRKTAVANPRQIERVIAGSKFDFEIFYNLDDIKEVEKDFENIKQGFDLLEFDYLGGHGTRGSGRIAFENLSVITAVGNFEKINTLNEILGA
CRISPR system Cms endoribonuclease Csm3 G 214 Lactococcus Lactis Subsp. Lactis , Synthetic Construct MKLVIEGTIVLKTGMHIGGSSDFSAIGAVDSPVVRDTLTRLPLIPGSSLKGKMRYLLAKELNNGILLNEPNNDQDEILRLFGSSEKDKIRRARLKFNDIKLSNLAELETFNVSSTEVKFENTINRKTAVANPRQIERVIAGSKFDFEIFYNLDDIKEVEKDFENIKQGFDLLEFDYLGGHGTRGSGRIAFENLSVITAVGNFEKINTLNEILGA
CRISPR system Cms endoribonuclease Csm3 I 214 Lactococcus Lactis Subsp. Lactis , Synthetic Construct MKLVIEGTIVLKTGMHIGGSSDFSAIGAVDSPVVRDTLTRLPLIPGSSLKGKMRYLLAKELNNGILLNEPNNDQDEILRLFGSSEKDKIRRARLKFNDIKLSNLAELETFNVSSTEVKFENTINRKTAVANPRQIERVIAGSKFDFEIFYNLDDIKEVEKDFENIKQGFDLLEFDYLGGHGTRGSGRIAFENLSVITAVGNFEKINTLNEILGA
CRISPR system Cms protein Csm2 D 150 Lactococcus Lactis Subsp. Lactis , Synthetic Construct MGHHHHHHSGGTELKIGNEKVNSTNFGDFAEKAIRGINHKPFVNSKGGEQKITTSKIRGILELVNKVYNRVINTNDVELSENILADIAYIKVKIAYESGREPVVKDFIQRTAFTAAITDVMNQRTRESFLLFARYVESLIAYFKFYGGKD
CRISPR system Cms protein Csm2 E 150 Lactococcus Lactis Subsp. Lactis , Synthetic Construct MGHHHHHHSGGTELKIGNEKVNSTNFGDFAEKAIRGINHKPFVNSKGGEQKITTSKIRGILELVNKVYNRVINTNDVELSENILADIAYIKVKIAYESGREPVVKDFIQRTAFTAAITDVMNQRTRESFLLFARYVESLIAYFKFYGGKD
CRISPR system Cms protein Csm2 C 150 Lactococcus Lactis Subsp. Lactis , Synthetic Construct MGHHHHHHSGGTELKIGNEKVNSTNFGDFAEKAIRGINHKPFVNSKGGEQKITTSKIRGILELVNKVYNRVINTNDVELSENILADIAYIKVKIAYESGREPVVKDFIQRTAFTAAITDVMNQRTRESFLLFARYVESLIAYFKFYGGKD
CRISPR system Cms protein Csm5 J 353 Lactococcus Lactis Subsp. Lactis , Synthetic Construct MKKTYRVTLTALGPIFIGGGEKLKKYEYIFDKQKKVAHMIDHTKFTKYLLEKNLLDDFTSRVNSHFDLYDYLVNKKGIVFMPLVKYSVPVAQFRTEVKNRFGKPISSPPMNDLNTFVKDAFGRPYIPGSSLKGALRTAILNDLKEDTKENEVFAHLQVSDSETIDLENLKVYQKVDYSKTAKPLPLYRECLKPNTEITFTVSFDDEYLTLKKIQNALHKTYQHYYIKWLKGGKVGETLIKGVYDSHADELKKNTFALDQPSQNQGEIIYIGGGAGFVSKTLHYKSKNRDQARNDSFDILKQLFRTTYSKMRSVPDNVPVALKLAVETKTFNGRVTGKHYLEMGKARIKLEELK
CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A) A 757 Lactococcus Lactis Subsp. Lactis , Synthetic Construct MDKINLVCGSLLADIGKIIYRGTSERAKHSKLGGDFIKSFEQFRNTELTDCIRYHHAQEITSVKSNKEKNSLFYITYIADNISSGMDRRKDLEEGAEGFNWDKKVALGSVFNVLNEKEKGRQNYSYPFVARTRIKEEPLNFPTATQNQYTTSYYDGLITDMKTILQRLKPDKEHINSLLQMMESLWSYVPSSTDKNQLVDISLYDHSRTTAAIASAIYDYFQAENITDYQKELFDYNATEFYDKNAFLMMNFDMSGVQNFIYNISGSKALKSLRARSFYLDMLLEYISDNLLEKLELSRANILYVGGGHAYLLLANTNKTKAILSDFEHDLKTWFLDKFKIDLYVAMAYTEVSANDLMNHNGHYRDIYRRLSQKTSAKKANRYTAEEILNLNHQGTENARECRECKRSDLLIEEDDICEICDSLQKVSRDLTRENIFVIANEGVLDMPFGKKMSALSYSQADKLKKSNAEVQIYAKNISEIGQNLMTRIDMGDYTYRSDFHEMLEEVEVGINRLGVLRADVDNLGQAFINGIPDDYLSISRTATFSRAMSRFFKNYLNQLLAEKSYKINVIYAGGDDLFMIGAWQDILDFSIVLKQKFADFTQNKLSISAGIGMFREKYPVARMASLTGDLEDAAKDYKPDERAVQATKNAVTLFDATNVFSWDTLENDIFVKLDAITKNFEKLDETGKAFIYRLIDLLRGVNENQQINIARLAYTLSRMEEKIGKTFAQELYNWANADRKTLIMALEIYILKTRER

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
CRISPR RNA r 37 NA ACGAGAACGCAGCACCAGCUGUCCAACCUGAAGAAGA
Target RNA t 36 NA CUUCUUCAGGUUGGACAGCUGGUGCUGCCAAGAGCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-02-25
Deposition Author(s): Goswami, H.N. , Li, H. , Wang, B.