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FASTA Sequence PDB Format mmCIF Format
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9AR4

Cryoem structure of thermocas9 in post-cleavage state bound with the dna containing nnnncca pam

PDB DOI: 10.2210/pdb9ar4/pdb

Classification: DNA BINDING PROTEIN/DNA/RNA
Organism(s): Geobacillus Thermodenitrificans , Synthetic Construct

Deposited: 2024-02-22
Deposition Author(s): Li, H. , Shu, Y. , Zhao, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.2 Å

Literature

Cryoem structure of thermocas9 in post-cleavage state bound with the dna containing nnnncca pam

Li, H. , Shu, Y. , Zhao, Y.

Primary Citation of Related Structures: 9AR4


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Single guide RNA b 149 NA GGUAGGAUGGCAAGAUCCUGGUAGUCAUAGUUCCCCUGGAAACAGGGUUACUAUGAUAAGGGCUUUCUGCCUAUAGGCAGACUGACCCGUGGCGUUGGGGAUCGCCUAUCGCCCGCUUUCUUCGGGCAUUCCCCACUCUUAGGCGUUUU
Cleaved 3' target DNA strand c 26 NA CAGGATCTTGCCATCCTACCTCTAGA
Cleaved 3' non-target DNA strand d 14 NA GTATACACCAAGCT
Cleaved 5' target DNA strand p 14 NA AGCTTGGTGTATAC
Cleaved 5' non-target DNA strand x 5 NA CTAGA

Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated endonuclease Cas9 A 1082 Geobacillus Thermodenitrificans , Synthetic Construct MKYKIGLDIGITSIGWAVINLDIPRIEDLGVRIFDRAENPKTGESLALPRRLARSARRRLRRRKHRLERIRRLFVREGILTKEELNKLFEKKHEIDVWQLRVEALDRKLNNDELARILLHLAKRRGFRSNRKSERTNKENSTMLKHIEENQSILSSYRTVAEMVVKDPKFSLHKRNKEDNYTNTVARDDLEREIKLIFAKQREYGNIVCTEAFEHEYISIWASQRPFASKDDIEKKVGFCTFEPKEKRAPKATYTFQSFTVWEHINKLRLVSPGGIRALTDDERRLIYKQAFHKNKITFHDVRTLLNLPDDTRFKGLLYDRNTTLKENEKVRFLELGAYHKIRKAIDSVYGKGAAKSFRPIDFDTFGYALTMFKDDTDIRSYLRNEYEQNGKRMENLADKVYDEELIEELLNLSFSKFGHLSLKALRNILPYMEQGEVYSTACERAGYTFTGPKKKQKTVLLPNIPPIANPVVMRALTQARKVVNAIIKKYGSPVSIHIELARELSQSFDERRKMQKEQEGNRKKNETAIRQLVEYGLTLNPTGLDIVKFKLWSEQNGKCAYSLQPIEIERLLEPGYTEVDHVIPYSRSLDDSYTNKVLVLTKENREKGNRTPAEYLGLGSERWQQFETFVLTNKQFSKKKRDRLLRLHYDENEENEFKNRNLNDTRYISRFLANFIREHLKFADSDDKQKVYTVNGRITAHLRSRWNFNKNREESNLHHAVDAAIVACTTPSDIARVTAFYQRREQNKELSKKTDPQFPQPWPHFADELQARLSKNPKESIKALNLGNYDNEKLESLQPVFVSRMPKRSITGAAHQETLRRYIGIDERSGKIQTVVKKKLSEIQLDKTGHFPMYGKESDPRTYEAIRQRLLEHNNDPKKAFQEPLYKPKKNGELGPIIRTIKIIDTTNQVIPLNDGKTVAYNSNIVRVDVFEKDGKYYCVPIYTIDMMKGILPNKAIEPNKPYSEWKEMTEDYTFRFSLYPNDLIRIEFPREKTIKTAVGEEIKIKDLFAYYQTIDSSNGGLSLVSHDNNFSLRSIGSRTLKRFEKYQVDVLGNIYKVRGEKRVGVASSSHSKAGETIRPL
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-02-22
Deposition Author(s): Li, H. , Shu, Y. , Zhao, Y.