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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8ZIT

Duf4297-hera complex with dna and atpgamas

PDB DOI: 10.2210/pdb8zit/pdb

Classification: IMMUNE SYSTEM/DNA
Organism(s): Agrobacterium Tumefaciens , Synthetic Construct

Deposited: 2024-05-14
Deposition Author(s): Chen, Q. , Yu, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.76 Å

8zit
Literature

Duf4297-hera complex with dna and atpgamas

Chen, Q. , Yu, Y.

Primary Citation of Related Structures: 8ZIT


Proteins
Molecule Chains Sequence Length Organism Sequence
DUF4297 A 397 Agrobacterium Tumefaciens , Synthetic Construct MARTAEYSIKGYLYQFLKYLSEILAAGDGARITIEGAIEDVDVIAAGLTTAVQCKYHEQAEKYTLGKIYKPILLMLEHFSKNSGTDLHVSYRLFCHFPGESGTKALTKDDLETVLSTKGEVLRAIVARIDTSVDYEAFLDRFAIEFGPSAEDLQVAVLASLKDKGFDPDDIDAVIFPNAIQRIVDLATRSDVNDRTVEPKTFLAGLREVRRVTFTRWTRELATKGRMFSSLRKSLRSCLAHNSRWRVFVINPLTIENFDDDIVRFIKAFVQRYSSKYLHSNPPLFMLTGDYDLSVLQKRLYDAGLRCETGKVGGTDVIIKELFRRPILIRNPFRMEFSLRLAKRDEVIGGPQRRPDELFLINVADDEWKHEDVNVHGFKIERLSDLEYILQLRSDYA
DUF4297 B 397 Agrobacterium Tumefaciens , Synthetic Construct MARTAEYSIKGYLYQFLKYLSEILAAGDGARITIEGAIEDVDVIAAGLTTAVQCKYHEQAEKYTLGKIYKPILLMLEHFSKNSGTDLHVSYRLFCHFPGESGTKALTKDDLETVLSTKGEVLRAIVARIDTSVDYEAFLDRFAIEFGPSAEDLQVAVLASLKDKGFDPDDIDAVIFPNAIQRIVDLATRSDVNDRTVEPKTFLAGLREVRRVTFTRWTRELATKGRMFSSLRKSLRSCLAHNSRWRVFVINPLTIENFDDDIVRFIKAFVQRYSSKYLHSNPPLFMLTGDYDLSVLQKRLYDAGLRCETGKVGGTDVIIKELFRRPILIRNPFRMEFSLRLAKRDEVIGGPQRRPDELFLINVADDEWKHEDVNVHGFKIERLSDLEYILQLRSDYA
DUF4297 C 397 Agrobacterium Tumefaciens , Synthetic Construct MARTAEYSIKGYLYQFLKYLSEILAAGDGARITIEGAIEDVDVIAAGLTTAVQCKYHEQAEKYTLGKIYKPILLMLEHFSKNSGTDLHVSYRLFCHFPGESGTKALTKDDLETVLSTKGEVLRAIVARIDTSVDYEAFLDRFAIEFGPSAEDLQVAVLASLKDKGFDPDDIDAVIFPNAIQRIVDLATRSDVNDRTVEPKTFLAGLREVRRVTFTRWTRELATKGRMFSSLRKSLRSCLAHNSRWRVFVINPLTIENFDDDIVRFIKAFVQRYSSKYLHSNPPLFMLTGDYDLSVLQKRLYDAGLRCETGKVGGTDVIIKELFRRPILIRNPFRMEFSLRLAKRDEVIGGPQRRPDELFLINVADDEWKHEDVNVHGFKIERLSDLEYILQLRSDYA
DUF4297 D 397 Agrobacterium Tumefaciens , Synthetic Construct MARTAEYSIKGYLYQFLKYLSEILAAGDGARITIEGAIEDVDVIAAGLTTAVQCKYHEQAEKYTLGKIYKPILLMLEHFSKNSGTDLHVSYRLFCHFPGESGTKALTKDDLETVLSTKGEVLRAIVARIDTSVDYEAFLDRFAIEFGPSAEDLQVAVLASLKDKGFDPDDIDAVIFPNAIQRIVDLATRSDVNDRTVEPKTFLAGLREVRRVTFTRWTRELATKGRMFSSLRKSLRSCLAHNSRWRVFVINPLTIENFDDDIVRFIKAFVQRYSSKYLHSNPPLFMLTGDYDLSVLQKRLYDAGLRCETGKVGGTDVIIKELFRRPILIRNPFRMEFSLRLAKRDEVIGGPQRRPDELFLINVADDEWKHEDVNVHGFKIERLSDLEYILQLRSDYA
DUF4297 E 397 Agrobacterium Tumefaciens , Synthetic Construct MARTAEYSIKGYLYQFLKYLSEILAAGDGARITIEGAIEDVDVIAAGLTTAVQCKYHEQAEKYTLGKIYKPILLMLEHFSKNSGTDLHVSYRLFCHFPGESGTKALTKDDLETVLSTKGEVLRAIVARIDTSVDYEAFLDRFAIEFGPSAEDLQVAVLASLKDKGFDPDDIDAVIFPNAIQRIVDLATRSDVNDRTVEPKTFLAGLREVRRVTFTRWTRELATKGRMFSSLRKSLRSCLAHNSRWRVFVINPLTIENFDDDIVRFIKAFVQRYSSKYLHSNPPLFMLTGDYDLSVLQKRLYDAGLRCETGKVGGTDVIIKELFRRPILIRNPFRMEFSLRLAKRDEVIGGPQRRPDELFLINVADDEWKHEDVNVHGFKIERLSDLEYILQLRSDYA
DUF4297 F 397 Agrobacterium Tumefaciens , Synthetic Construct MARTAEYSIKGYLYQFLKYLSEILAAGDGARITIEGAIEDVDVIAAGLTTAVQCKYHEQAEKYTLGKIYKPILLMLEHFSKNSGTDLHVSYRLFCHFPGESGTKALTKDDLETVLSTKGEVLRAIVARIDTSVDYEAFLDRFAIEFGPSAEDLQVAVLASLKDKGFDPDDIDAVIFPNAIQRIVDLATRSDVNDRTVEPKTFLAGLREVRRVTFTRWTRELATKGRMFSSLRKSLRSCLAHNSRWRVFVINPLTIENFDDDIVRFIKAFVQRYSSKYLHSNPPLFMLTGDYDLSVLQKRLYDAGLRCETGKVGGTDVIIKELFRRPILIRNPFRMEFSLRLAKRDEVIGGPQRRPDELFLINVADDEWKHEDVNVHGFKIERLSDLEYILQLRSDYA
DUF4297 G 397 Agrobacterium Tumefaciens , Synthetic Construct MARTAEYSIKGYLYQFLKYLSEILAAGDGARITIEGAIEDVDVIAAGLTTAVQCKYHEQAEKYTLGKIYKPILLMLEHFSKNSGTDLHVSYRLFCHFPGESGTKALTKDDLETVLSTKGEVLRAIVARIDTSVDYEAFLDRFAIEFGPSAEDLQVAVLASLKDKGFDPDDIDAVIFPNAIQRIVDLATRSDVNDRTVEPKTFLAGLREVRRVTFTRWTRELATKGRMFSSLRKSLRSCLAHNSRWRVFVINPLTIENFDDDIVRFIKAFVQRYSSKYLHSNPPLFMLTGDYDLSVLQKRLYDAGLRCETGKVGGTDVIIKELFRRPILIRNPFRMEFSLRLAKRDEVIGGPQRRPDELFLINVADDEWKHEDVNVHGFKIERLSDLEYILQLRSDYA
DUF4297 H 397 Agrobacterium Tumefaciens , Synthetic Construct MARTAEYSIKGYLYQFLKYLSEILAAGDGARITIEGAIEDVDVIAAGLTTAVQCKYHEQAEKYTLGKIYKPILLMLEHFSKNSGTDLHVSYRLFCHFPGESGTKALTKDDLETVLSTKGEVLRAIVARIDTSVDYEAFLDRFAIEFGPSAEDLQVAVLASLKDKGFDPDDIDAVIFPNAIQRIVDLATRSDVNDRTVEPKTFLAGLREVRRVTFTRWTRELATKGRMFSSLRKSLRSCLAHNSRWRVFVINPLTIENFDDDIVRFIKAFVQRYSSKYLHSNPPLFMLTGDYDLSVLQKRLYDAGLRCETGKVGGTDVIIKELFRRPILIRNPFRMEFSLRLAKRDEVIGGPQRRPDELFLINVADDEWKHEDVNVHGFKIERLSDLEYILQLRSDYA
DUF4297 I 397 Agrobacterium Tumefaciens , Synthetic Construct MARTAEYSIKGYLYQFLKYLSEILAAGDGARITIEGAIEDVDVIAAGLTTAVQCKYHEQAEKYTLGKIYKPILLMLEHFSKNSGTDLHVSYRLFCHFPGESGTKALTKDDLETVLSTKGEVLRAIVARIDTSVDYEAFLDRFAIEFGPSAEDLQVAVLASLKDKGFDPDDIDAVIFPNAIQRIVDLATRSDVNDRTVEPKTFLAGLREVRRVTFTRWTRELATKGRMFSSLRKSLRSCLAHNSRWRVFVINPLTIENFDDDIVRFIKAFVQRYSSKYLHSNPPLFMLTGDYDLSVLQKRLYDAGLRCETGKVGGTDVIIKELFRRPILIRNPFRMEFSLRLAKRDEVIGGPQRRPDELFLINVADDEWKHEDVNVHGFKIERLSDLEYILQLRSDYA
DUF4297 J 397 Agrobacterium Tumefaciens , Synthetic Construct MARTAEYSIKGYLYQFLKYLSEILAAGDGARITIEGAIEDVDVIAAGLTTAVQCKYHEQAEKYTLGKIYKPILLMLEHFSKNSGTDLHVSYRLFCHFPGESGTKALTKDDLETVLSTKGEVLRAIVARIDTSVDYEAFLDRFAIEFGPSAEDLQVAVLASLKDKGFDPDDIDAVIFPNAIQRIVDLATRSDVNDRTVEPKTFLAGLREVRRVTFTRWTRELATKGRMFSSLRKSLRSCLAHNSRWRVFVINPLTIENFDDDIVRFIKAFVQRYSSKYLHSNPPLFMLTGDYDLSVLQKRLYDAGLRCETGKVGGTDVIIKELFRRPILIRNPFRMEFSLRLAKRDEVIGGPQRRPDELFLINVADDEWKHEDVNVHGFKIERLSDLEYILQLRSDYA
DUF4297 K 397 Agrobacterium Tumefaciens , Synthetic Construct MARTAEYSIKGYLYQFLKYLSEILAAGDGARITIEGAIEDVDVIAAGLTTAVQCKYHEQAEKYTLGKIYKPILLMLEHFSKNSGTDLHVSYRLFCHFPGESGTKALTKDDLETVLSTKGEVLRAIVARIDTSVDYEAFLDRFAIEFGPSAEDLQVAVLASLKDKGFDPDDIDAVIFPNAIQRIVDLATRSDVNDRTVEPKTFLAGLREVRRVTFTRWTRELATKGRMFSSLRKSLRSCLAHNSRWRVFVINPLTIENFDDDIVRFIKAFVQRYSSKYLHSNPPLFMLTGDYDLSVLQKRLYDAGLRCETGKVGGTDVIIKELFRRPILIRNPFRMEFSLRLAKRDEVIGGPQRRPDELFLINVADDEWKHEDVNVHGFKIERLSDLEYILQLRSDYA
DUF4297 L 397 Agrobacterium Tumefaciens , Synthetic Construct MARTAEYSIKGYLYQFLKYLSEILAAGDGARITIEGAIEDVDVIAAGLTTAVQCKYHEQAEKYTLGKIYKPILLMLEHFSKNSGTDLHVSYRLFCHFPGESGTKALTKDDLETVLSTKGEVLRAIVARIDTSVDYEAFLDRFAIEFGPSAEDLQVAVLASLKDKGFDPDDIDAVIFPNAIQRIVDLATRSDVNDRTVEPKTFLAGLREVRRVTFTRWTRELATKGRMFSSLRKSLRSCLAHNSRWRVFVINPLTIENFDDDIVRFIKAFVQRYSSKYLHSNPPLFMLTGDYDLSVLQKRLYDAGLRCETGKVGGTDVIIKELFRRPILIRNPFRMEFSLRLAKRDEVIGGPQRRPDELFLINVADDEWKHEDVNVHGFKIERLSDLEYILQLRSDYA
HerA M 617 Agrobacterium Tumefaciens , Synthetic Construct MPDLGTPIGSVTDSSPSLIRIEISSAEDFEKYKSMLGVGQYLLVASGNNLYLLASITGVRATHVERRSLGPSSEVHSEEGSDGISGNFRFQIDTQPIGTLSEDGEFSRGSHSLPVPTEYAYVTPPAVLEGIFSHQIKSPFALGTLGISPDIKLKIDGDRFFSKHVAVVGSTGSGKSCAVAKILQTAVGIESKANAHKAAQKNSHIVIFDIHAEYAAAFNLEAGEAFTLNLLGVDNLRLPYWLMNAQELEQIFIESNEHNSHNQISQFRHAVVRNKCKHNPTLTNLSFDTPVYFSIDEVVTYLENMNNEVIGKLAGEGKPKLANETLVSDRDELYFDAVQSFIVASQAAATKASNGPFNGEFDRMILRLHTRLADPRLQFLFYPKKEDGEDLATGDFADVVRQFVGYMTKSNVSIIDLSGIPFEVLSIVVSLISRMIFDFGFHYSKNRHVGGAVSDVPILVVCEEAHNYLPRSGGAAYDASRKSIERIAKEGRKYGVTLMVVSQRPSEVSETIFSQCSNFISLRLTNAVDQTYVKSLLPDLSAGLGDLLPNLAQGEFLIVGDAPLMPTVGHFALPVPEPHSRSVNYLQEWNSGWRHVDFDSVIDRWRGKVLTKSEKGV
HerA N 617 Agrobacterium Tumefaciens , Synthetic Construct MPDLGTPIGSVTDSSPSLIRIEISSAEDFEKYKSMLGVGQYLLVASGNNLYLLASITGVRATHVERRSLGPSSEVHSEEGSDGISGNFRFQIDTQPIGTLSEDGEFSRGSHSLPVPTEYAYVTPPAVLEGIFSHQIKSPFALGTLGISPDIKLKIDGDRFFSKHVAVVGSTGSGKSCAVAKILQTAVGIESKANAHKAAQKNSHIVIFDIHAEYAAAFNLEAGEAFTLNLLGVDNLRLPYWLMNAQELEQIFIESNEHNSHNQISQFRHAVVRNKCKHNPTLTNLSFDTPVYFSIDEVVTYLENMNNEVIGKLAGEGKPKLANETLVSDRDELYFDAVQSFIVASQAAATKASNGPFNGEFDRMILRLHTRLADPRLQFLFYPKKEDGEDLATGDFADVVRQFVGYMTKSNVSIIDLSGIPFEVLSIVVSLISRMIFDFGFHYSKNRHVGGAVSDVPILVVCEEAHNYLPRSGGAAYDASRKSIERIAKEGRKYGVTLMVVSQRPSEVSETIFSQCSNFISLRLTNAVDQTYVKSLLPDLSAGLGDLLPNLAQGEFLIVGDAPLMPTVGHFALPVPEPHSRSVNYLQEWNSGWRHVDFDSVIDRWRGKVLTKSEKGV
HerA O 617 Agrobacterium Tumefaciens , Synthetic Construct MPDLGTPIGSVTDSSPSLIRIEISSAEDFEKYKSMLGVGQYLLVASGNNLYLLASITGVRATHVERRSLGPSSEVHSEEGSDGISGNFRFQIDTQPIGTLSEDGEFSRGSHSLPVPTEYAYVTPPAVLEGIFSHQIKSPFALGTLGISPDIKLKIDGDRFFSKHVAVVGSTGSGKSCAVAKILQTAVGIESKANAHKAAQKNSHIVIFDIHAEYAAAFNLEAGEAFTLNLLGVDNLRLPYWLMNAQELEQIFIESNEHNSHNQISQFRHAVVRNKCKHNPTLTNLSFDTPVYFSIDEVVTYLENMNNEVIGKLAGEGKPKLANETLVSDRDELYFDAVQSFIVASQAAATKASNGPFNGEFDRMILRLHTRLADPRLQFLFYPKKEDGEDLATGDFADVVRQFVGYMTKSNVSIIDLSGIPFEVLSIVVSLISRMIFDFGFHYSKNRHVGGAVSDVPILVVCEEAHNYLPRSGGAAYDASRKSIERIAKEGRKYGVTLMVVSQRPSEVSETIFSQCSNFISLRLTNAVDQTYVKSLLPDLSAGLGDLLPNLAQGEFLIVGDAPLMPTVGHFALPVPEPHSRSVNYLQEWNSGWRHVDFDSVIDRWRGKVLTKSEKGV
HerA P 617 Agrobacterium Tumefaciens , Synthetic Construct MPDLGTPIGSVTDSSPSLIRIEISSAEDFEKYKSMLGVGQYLLVASGNNLYLLASITGVRATHVERRSLGPSSEVHSEEGSDGISGNFRFQIDTQPIGTLSEDGEFSRGSHSLPVPTEYAYVTPPAVLEGIFSHQIKSPFALGTLGISPDIKLKIDGDRFFSKHVAVVGSTGSGKSCAVAKILQTAVGIESKANAHKAAQKNSHIVIFDIHAEYAAAFNLEAGEAFTLNLLGVDNLRLPYWLMNAQELEQIFIESNEHNSHNQISQFRHAVVRNKCKHNPTLTNLSFDTPVYFSIDEVVTYLENMNNEVIGKLAGEGKPKLANETLVSDRDELYFDAVQSFIVASQAAATKASNGPFNGEFDRMILRLHTRLADPRLQFLFYPKKEDGEDLATGDFADVVRQFVGYMTKSNVSIIDLSGIPFEVLSIVVSLISRMIFDFGFHYSKNRHVGGAVSDVPILVVCEEAHNYLPRSGGAAYDASRKSIERIAKEGRKYGVTLMVVSQRPSEVSETIFSQCSNFISLRLTNAVDQTYVKSLLPDLSAGLGDLLPNLAQGEFLIVGDAPLMPTVGHFALPVPEPHSRSVNYLQEWNSGWRHVDFDSVIDRWRGKVLTKSEKGV
HerA Q 617 Agrobacterium Tumefaciens , Synthetic Construct MPDLGTPIGSVTDSSPSLIRIEISSAEDFEKYKSMLGVGQYLLVASGNNLYLLASITGVRATHVERRSLGPSSEVHSEEGSDGISGNFRFQIDTQPIGTLSEDGEFSRGSHSLPVPTEYAYVTPPAVLEGIFSHQIKSPFALGTLGISPDIKLKIDGDRFFSKHVAVVGSTGSGKSCAVAKILQTAVGIESKANAHKAAQKNSHIVIFDIHAEYAAAFNLEAGEAFTLNLLGVDNLRLPYWLMNAQELEQIFIESNEHNSHNQISQFRHAVVRNKCKHNPTLTNLSFDTPVYFSIDEVVTYLENMNNEVIGKLAGEGKPKLANETLVSDRDELYFDAVQSFIVASQAAATKASNGPFNGEFDRMILRLHTRLADPRLQFLFYPKKEDGEDLATGDFADVVRQFVGYMTKSNVSIIDLSGIPFEVLSIVVSLISRMIFDFGFHYSKNRHVGGAVSDVPILVVCEEAHNYLPRSGGAAYDASRKSIERIAKEGRKYGVTLMVVSQRPSEVSETIFSQCSNFISLRLTNAVDQTYVKSLLPDLSAGLGDLLPNLAQGEFLIVGDAPLMPTVGHFALPVPEPHSRSVNYLQEWNSGWRHVDFDSVIDRWRGKVLTKSEKGV
HerA R 617 Agrobacterium Tumefaciens , Synthetic Construct MPDLGTPIGSVTDSSPSLIRIEISSAEDFEKYKSMLGVGQYLLVASGNNLYLLASITGVRATHVERRSLGPSSEVHSEEGSDGISGNFRFQIDTQPIGTLSEDGEFSRGSHSLPVPTEYAYVTPPAVLEGIFSHQIKSPFALGTLGISPDIKLKIDGDRFFSKHVAVVGSTGSGKSCAVAKILQTAVGIESKANAHKAAQKNSHIVIFDIHAEYAAAFNLEAGEAFTLNLLGVDNLRLPYWLMNAQELEQIFIESNEHNSHNQISQFRHAVVRNKCKHNPTLTNLSFDTPVYFSIDEVVTYLENMNNEVIGKLAGEGKPKLANETLVSDRDELYFDAVQSFIVASQAAATKASNGPFNGEFDRMILRLHTRLADPRLQFLFYPKKEDGEDLATGDFADVVRQFVGYMTKSNVSIIDLSGIPFEVLSIVVSLISRMIFDFGFHYSKNRHVGGAVSDVPILVVCEEAHNYLPRSGGAAYDASRKSIERIAKEGRKYGVTLMVVSQRPSEVSETIFSQCSNFISLRLTNAVDQTYVKSLLPDLSAGLGDLLPNLAQGEFLIVGDAPLMPTVGHFALPVPEPHSRSVNYLQEWNSGWRHVDFDSVIDRWRGKVLTKSEKGV

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*A)-3') u 16 NA TATATATATATATATA
DNA (5'-D(*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*T)-3') v 17 NA TATATATATATATATAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-05-14
Deposition Author(s): Chen, Q. , Yu, Y.