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FASTA Sequence PDB Format mmCIF Format
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8ZES

Crystal structure of the wuhan sars-cov-2 rbd (333-541) complexed with p2c5 nanobody

PDB DOI: 10.2210/pdb8zes/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Camelus Bactrianus , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2024-05-06
Deposition Author(s): Boyko, K.M. , Gintsburg, A.L. , Logunov, D.Y. , Popov, V.O. , Shcheblyakov, D.V. , Sluchanko, N.N. , Varfolomeeva, L.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.7 Å

Literature

Crystal structure of the wuhan sars-cov-2 rbd (333-541) complexed with p2c5 nanobody

Boyko, K.M. , Gintsburg, A.L. , Logunov, D.Y. , Popov, V.O. , Shcheblyakov, D.V. , Sluchanko, N.N. , Varfolomeeva, L.A.

Primary Citation of Related Structures: 8ZES


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 C 221 Camelus Bactrianus , Severe Acute Respiratory Syndrome Coronavirus 2 TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFGSHHHHHHHHHH
Spike protein S1 A 221 Camelus Bactrianus , Severe Acute Respiratory Syndrome Coronavirus 2 TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFGSHHHHHHHHHH
Spike protein S1 G 221 Camelus Bactrianus , Severe Acute Respiratory Syndrome Coronavirus 2 TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFGSHHHHHHHHHH
Spike protein S1 I 221 Camelus Bactrianus , Severe Acute Respiratory Syndrome Coronavirus 2 TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFGSHHHHHHHHHH
Spike protein S1 D 221 Camelus Bactrianus , Severe Acute Respiratory Syndrome Coronavirus 2 TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFGSHHHHHHHHHH
Nanobody P2C5 E 146 Camelus Bactrianus , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGSVQAGGSLRLSCVASGYTYCSYDMSWYRQAPGKEREFVSIIRRDGSTAYTDAVKGRFAISRDNAKNTLYLQMNSLEPEDTAMYYCKSWACSSGEYLYQGDWGQGTQVTVSSAAAEQKLISEEDLNGAAHHHHHHGS
Nanobody P2C5 B 146 Camelus Bactrianus , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGSVQAGGSLRLSCVASGYTYCSYDMSWYRQAPGKEREFVSIIRRDGSTAYTDAVKGRFAISRDNAKNTLYLQMNSLEPEDTAMYYCKSWACSSGEYLYQGDWGQGTQVTVSSAAAEQKLISEEDLNGAAHHHHHHGS
Nanobody P2C5 F 146 Camelus Bactrianus , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGSVQAGGSLRLSCVASGYTYCSYDMSWYRQAPGKEREFVSIIRRDGSTAYTDAVKGRFAISRDNAKNTLYLQMNSLEPEDTAMYYCKSWACSSGEYLYQGDWGQGTQVTVSSAAAEQKLISEEDLNGAAHHHHHHGS
Nanobody P2C5 H 146 Camelus Bactrianus , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGSVQAGGSLRLSCVASGYTYCSYDMSWYRQAPGKEREFVSIIRRDGSTAYTDAVKGRFAISRDNAKNTLYLQMNSLEPEDTAMYYCKSWACSSGEYLYQGDWGQGTQVTVSSAAAEQKLISEEDLNGAAHHHHHHGS
Nanobody P2C5 J 146 Camelus Bactrianus , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGSVQAGGSLRLSCVASGYTYCSYDMSWYRQAPGKEREFVSIIRRDGSTAYTDAVKGRFAISRDNAKNTLYLQMNSLEPEDTAMYYCKSWACSSGEYLYQGDWGQGTQVTVSSAAAEQKLISEEDLNGAAHHHHHHGS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2024-05-06
Deposition Author(s): Boyko, K.M. , Gintsburg, A.L. , Logunov, D.Y. , Popov, V.O. , Shcheblyakov, D.V. , Sluchanko, N.N. , Varfolomeeva, L.A.