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FASTA Sequence PDB Format mmCIF Format
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8ZDR

Cryo-em structure of the cas9d-sgrna-target dna complex

PDB DOI: 10.2210/pdb8zdr/pdb

Classification: ANTIVIRAL PROTEIN
Organism(s): Metagenome

Deposited: 2024-05-03
Deposition Author(s): Li, X. , Liu, Z. , Zhang, H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.65 Å

Literature

Cryo-em structure of the cas9d-sgrna-target dna complex

Li, X. , Liu, Z. , Zhang, H.

Primary Citation of Related Structures: 8ZDR


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (144-MER) a 159 NA GGUUCGAAAUUAGGUGCGCUUCGCGUUACAGUUAAGGCUCUGAAAAGAGCCUUAAUUGUAAAACGCCUAUACAGUGAAGGGAUAUACGCUUGGGUUUGUCCAGCCUGAGCCUCUAUGCCAGAAAUGGCGCCUUCAUCGUGGGUUAGGACAUUUAAUUUU
DNA (32-MER) b 37 NA CATTTGACCCGCGAAGCGCACCTAATTTCGAAGCCCT
DNA (5'-D(P*CP*GP*GP*GP*TP*CP*AP*AP*AP*TP*G)-3') d 37 NA AGGGCTTCGAAATTAGGTGCGCTTCGCGGGTCAAATG

Proteins
Molecule Chains Sequence Length Organism Sequence
a protein C 747 Metagenome MERELVLGIAYGGKYTGLAVVDRRHNQVLYANRLKMRDDVAGILKDRRKQRGIRRTAQTKKKRLRELKNYLKSIGYNESTATFETVYSLAHKRGYDYADMPEEKTSEEIEAMDVEERKQWEKEKQEWEETKRNSRHRKEVVKDVHKAMIEGRATEEQIKRVERIFNKQYRPKRFNNRILTKCKVEDCGVNTPLRKNVRDLLIENIVRFFPIEQSEKDNLKDAVLDKNRREEVKSFFRKHKTDEHIRKQVYDIADNKLSGRTVFCKEHILEHTEHSKEERKVFRLAPSLKTKIENVLAVIKDEILPKFTVNKVVMESNNFDIAAKTQGKKRLAKEEYGKGPREGKETRKEALLRETDGRCIYCGKSIDISNAHDDAIFPRKAGGLNIFANLVACCAVCNENKKGRTPLESGISPKPEIIAFMKNDLKKKILEDARNINTVDFNKYMSHASIGWRYMRDRLRESAGNKKLPIERQSGIYTAYFRRWWGFKKERGNTLHHALDAVILASRKGYSDDGLVDMTLKPKYNKGGEFDPEKHLPEPIEFKMDKGSRGSALHDRNPLSYKKGIITRRFMVTEIECGKEDDVISETYREKLKEAFKRFDTKKGKCLTDKEAKEAGFCIKKNELVMSLKCSIKGTGPGQMIRINNNVFKTNVHNVGVDVYLDEKGKKKAYERKNPRLSKHFIEPPPQPNGRVSFTLKRRDMVTVEGEDAIYRIKKLGTSPTIEAVVGSDGKTRTVSATKLTKANSAE
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-05-03
Deposition Author(s): Li, X. , Liu, Z. , Zhang, H.