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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8ZDM

Cryo-em structure of mycobacteriophage douge genome-free vertex (gp8)

PDB DOI: 10.2210/pdb8zdm/pdb

Classification: VIRAL PROTEIN
Organism(s): Mycolicibacterium Smegmatis Mc2 155

Deposited: 2024-05-02
Deposition Author(s): Ho, M.C. , Lowary, T.L. , Maharana, J. , Tsai, L.A. , Wang, C.H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.22 Å

8zdm
Literature

Cryo-em structure of mycobacteriophage douge genome-free vertex (gp8)

Ho, M.C. , Lowary, T.L. , Maharana, J. , Tsai, L.A. , Wang, C.H.

Primary Citation of Related Structures: 8ZDM


Proteins
Molecule Chains Sequence Length Organism Sequence
Major capsid protein (gp8) 1 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major capsid protein (gp8) 2 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major capsid protein (gp8) 3 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major capsid protein (gp8) 4 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major capsid protein (gp8) 5 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major capsid protein (gp8) 6 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major capsid protein (gp8) M 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major capsid protein (gp8) N 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major capsid protein (gp8) O 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major capsid protein (gp8) P 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major capsid protein (gp8) Q 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major capsid protein (gp8) R 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major capsid protein (gp8) T 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major capsid protein (gp8) U 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major capsid protein (gp8) V 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major capsid protein (gp8) W 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major capsid protein (gp8) X 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major capsid protein (gp8) Y 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-05-02
Deposition Author(s): Ho, M.C. , Lowary, T.L. , Maharana, J. , Tsai, L.A. , Wang, C.H.