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FASTA Sequence PDB Format mmCIF Format
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8ZDK

Cryo-em structure of mycobacteriophage douge genome-packed vertex (gp8 and gp113)

PDB DOI: 10.2210/pdb8zdk/pdb

Classification: VIRAL PROTEIN
Organism(s): Mycolicibacterium Smegmatis Mc2 155

Deposited: 2024-05-02
Deposition Author(s): Ho, M.C. , Lowary, T.L. , Maharana, J. , Tsai, L.A. , Wang, C.H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.44 Å

8zdk
Literature

Cryo-em structure of mycobacteriophage douge genome-packed vertex (gp8 and gp113)

Ho, M.C. , Lowary, T.L. , Maharana, J. , Tsai, L.A. , Wang, C.H.

Primary Citation of Related Structures: 8ZDK


Proteins
Molecule Chains Sequence Length Organism Sequence
Major Capsid Protein (gp8) 1 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major Capsid Protein (gp8) 2 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major Capsid Protein (gp8) 3 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major Capsid Protein (gp8) 4 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major Capsid Protein (gp8) 5 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major Capsid Protein (gp8) 6 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major Capsid Protein (gp8) M 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major Capsid Protein (gp8) N 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major Capsid Protein (gp8) O 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major Capsid Protein (gp8) P 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major Capsid Protein (gp8) Q 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major Capsid Protein (gp8) R 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major Capsid Protein (gp8) T 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major Capsid Protein (gp8) U 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major Capsid Protein (gp8) V 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major Capsid Protein (gp8) W 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major Capsid Protein (gp8) X 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Major Capsid Protein (gp8) Y 382 Mycolicibacterium Smegmatis Mc2 155 MAHIFVKPELVAEIGVKQLQREIVLPGLVWTNPLTDFGGSKNDTITVRVPAITTANRRDLRDPDRTVIASELVEHSFGVTLDKHVYAALKFTDEQRTLDIRDYTKQVLMPQVSAVAYELEDYIAELIEGAPYEETILIDPADTVPAFITADQRMGEANVPTDSRRLVVGSAVAAALAKDKQFRHADWSGDQANAALREAHVGRLAGMNVIRSNAIAPDKAYLWHRTAFILAYRTPVVPEGAKAGASFSANGVALRWLADYDYSQLGDRTLLDVFTGRKVVTEVDGSFVRAVELQLQASSITIVGGAFALATTTGTKQLKVRDDNGTDVTARCTFASSAGTKATVSAAGLVTGVAAGTADITASYVPPQGGTAKTATVTVTVP
Capsid Cement Protein (gp113) 7 49 Mycolicibacterium Smegmatis Mc2 155 MGLISDPVEVDPIQVGRDEAGWVQELRDREAWPKQEVPEQAKKPAKVGN
Capsid Cement Protein (gp113) S 49 Mycolicibacterium Smegmatis Mc2 155 MGLISDPVEVDPIQVGRDEAGWVQELRDREAWPKQEVPEQAKKPAKVGN
Capsid Cement Protein (gp113) Z 49 Mycolicibacterium Smegmatis Mc2 155 MGLISDPVEVDPIQVGRDEAGWVQELRDREAWPKQEVPEQAKKPAKVGN
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-05-02
Deposition Author(s): Ho, M.C. , Lowary, T.L. , Maharana, J. , Tsai, L.A. , Wang, C.H.