8ZDJ
Cryo-em structure of mycobacteriophage douge genome-packed connector (gp5, gp9, gp10, gp12 and gp13)
PDB DOI: 10.2210/pdb8zdj/pdb
Classification: VIRAL PROTEIN Organism(s): Mycolicibacterium Smegmatis Mc2 155
Deposited: 2024-05-02 Deposition Author(s): Ho, M.C. , Lowary, T.L. , Maharana, J. , Tsai, L.A. , Wang, C.H.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.74 Å
Cryo-em structure of mycobacteriophage douge genome-packed connector (gp5, gp9, gp10, gp12 and gp13)
Ho, M.C. , Lowary, T.L. , Maharana, J. , Tsai, L.A. , Wang, C.H.
Primary Citation of Related Structures: 8ZDJ
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Adaptor Protein (gp9) | A | 137 | Mycolicibacterium Smegmatis Mc2 155 | AGLATIDELQTLMSTVFEDDALEQAQLVLDIVSSWARVVSGQMWPDAPANVPDDVRAVVLQASRRELKNPDRVISRQMGPFNVQYSQPPDGFFYPAELAILKRFKRSGGLMTVSTSRGEEGRPWAGKTAYIRYGDGL |
| Adaptor Protein (gp9) | B | 137 | Mycolicibacterium Smegmatis Mc2 155 | AGLATIDELQTLMSTVFEDDALEQAQLVLDIVSSWARVVSGQMWPDAPANVPDDVRAVVLQASRRELKNPDRVISRQMGPFNVQYSQPPDGFFYPAELAILKRFKRSGGLMTVSTSRGEEGRPWAGKTAYIRYGDGL |
| Adaptor Protein (gp9) | C | 137 | Mycolicibacterium Smegmatis Mc2 155 | AGLATIDELQTLMSTVFEDDALEQAQLVLDIVSSWARVVSGQMWPDAPANVPDDVRAVVLQASRRELKNPDRVISRQMGPFNVQYSQPPDGFFYPAELAILKRFKRSGGLMTVSTSRGEEGRPWAGKTAYIRYGDGL |
| Adaptor Protein (gp9) | D | 137 | Mycolicibacterium Smegmatis Mc2 155 | AGLATIDELQTLMSTVFEDDALEQAQLVLDIVSSWARVVSGQMWPDAPANVPDDVRAVVLQASRRELKNPDRVISRQMGPFNVQYSQPPDGFFYPAELAILKRFKRSGGLMTVSTSRGEEGRPWAGKTAYIRYGDGL |
| Adaptor Protein (gp9) | E | 137 | Mycolicibacterium Smegmatis Mc2 155 | AGLATIDELQTLMSTVFEDDALEQAQLVLDIVSSWARVVSGQMWPDAPANVPDDVRAVVLQASRRELKNPDRVISRQMGPFNVQYSQPPDGFFYPAELAILKRFKRSGGLMTVSTSRGEEGRPWAGKTAYIRYGDGL |
| Adaptor Protein (gp9) | F | 137 | Mycolicibacterium Smegmatis Mc2 155 | AGLATIDELQTLMSTVFEDDALEQAQLVLDIVSSWARVVSGQMWPDAPANVPDDVRAVVLQASRRELKNPDRVISRQMGPFNVQYSQPPDGFFYPAELAILKRFKRSGGLMTVSTSRGEEGRPWAGKTAYIRYGDGL |
| Adaptor Protein (gp9) | G | 137 | Mycolicibacterium Smegmatis Mc2 155 | AGLATIDELQTLMSTVFEDDALEQAQLVLDIVSSWARVVSGQMWPDAPANVPDDVRAVVLQASRRELKNPDRVISRQMGPFNVQYSQPPDGFFYPAELAILKRFKRSGGLMTVSTSRGEEGRPWAGKTAYIRYGDGL |
| Adaptor Protein (gp9) | H | 137 | Mycolicibacterium Smegmatis Mc2 155 | AGLATIDELQTLMSTVFEDDALEQAQLVLDIVSSWARVVSGQMWPDAPANVPDDVRAVVLQASRRELKNPDRVISRQMGPFNVQYSQPPDGFFYPAELAILKRFKRSGGLMTVSTSRGEEGRPWAGKTAYIRYGDGL |
| Adaptor Protein (gp9) | I | 137 | Mycolicibacterium Smegmatis Mc2 155 | AGLATIDELQTLMSTVFEDDALEQAQLVLDIVSSWARVVSGQMWPDAPANVPDDVRAVVLQASRRELKNPDRVISRQMGPFNVQYSQPPDGFFYPAELAILKRFKRSGGLMTVSTSRGEEGRPWAGKTAYIRYGDGL |
| Adaptor Protein (gp9) | J | 137 | Mycolicibacterium Smegmatis Mc2 155 | AGLATIDELQTLMSTVFEDDALEQAQLVLDIVSSWARVVSGQMWPDAPANVPDDVRAVVLQASRRELKNPDRVISRQMGPFNVQYSQPPDGFFYPAELAILKRFKRSGGLMTVSTSRGEEGRPWAGKTAYIRYGDGL |
| Adaptor Protein (gp9) | K | 137 | Mycolicibacterium Smegmatis Mc2 155 | AGLATIDELQTLMSTVFEDDALEQAQLVLDIVSSWARVVSGQMWPDAPANVPDDVRAVVLQASRRELKNPDRVISRQMGPFNVQYSQPPDGFFYPAELAILKRFKRSGGLMTVSTSRGEEGRPWAGKTAYIRYGDGL |
| Adaptor Protein (gp9) | L | 137 | Mycolicibacterium Smegmatis Mc2 155 | AGLATIDELQTLMSTVFEDDALEQAQLVLDIVSSWARVVSGQMWPDAPANVPDDVRAVVLQASRRELKNPDRVISRQMGPFNVQYSQPPDGFFYPAELAILKRFKRSGGLMTVSTSRGEEGRPWAGKTAYIRYGDGL |
| Terminator Protein (gp12) | M | 165 | Mycolicibacterium Smegmatis Mc2 155 | AVVLPDWYEEAFVNVENLFIDMFTDLLPDYESGCWAPDDWLADEIEVKPTIWFFRLPGGRVDWDGRKDECQLQVMVVTGSRDDSWRLMDFVRAMLLPMQGDKYKMADGYTAQIRCAGEVAGPQLLTPGQRIDTRVVTATFKVSVSMKSAKNYKQKLYELWQALRG |
| Terminator Protein (gp12) | N | 165 | Mycolicibacterium Smegmatis Mc2 155 | AVVLPDWYEEAFVNVENLFIDMFTDLLPDYESGCWAPDDWLADEIEVKPTIWFFRLPGGRVDWDGRKDECQLQVMVVTGSRDDSWRLMDFVRAMLLPMQGDKYKMADGYTAQIRCAGEVAGPQLLTPGQRIDTRVVTATFKVSVSMKSAKNYKQKLYELWQALRG |
| Terminator Protein (gp12) | O | 165 | Mycolicibacterium Smegmatis Mc2 155 | AVVLPDWYEEAFVNVENLFIDMFTDLLPDYESGCWAPDDWLADEIEVKPTIWFFRLPGGRVDWDGRKDECQLQVMVVTGSRDDSWRLMDFVRAMLLPMQGDKYKMADGYTAQIRCAGEVAGPQLLTPGQRIDTRVVTATFKVSVSMKSAKNYKQKLYELWQALRG |
| Terminator Protein (gp12) | P | 165 | Mycolicibacterium Smegmatis Mc2 155 | AVVLPDWYEEAFVNVENLFIDMFTDLLPDYESGCWAPDDWLADEIEVKPTIWFFRLPGGRVDWDGRKDECQLQVMVVTGSRDDSWRLMDFVRAMLLPMQGDKYKMADGYTAQIRCAGEVAGPQLLTPGQRIDTRVVTATFKVSVSMKSAKNYKQKLYELWQALRG |
| Terminator Protein (gp12) | Q | 165 | Mycolicibacterium Smegmatis Mc2 155 | AVVLPDWYEEAFVNVENLFIDMFTDLLPDYESGCWAPDDWLADEIEVKPTIWFFRLPGGRVDWDGRKDECQLQVMVVTGSRDDSWRLMDFVRAMLLPMQGDKYKMADGYTAQIRCAGEVAGPQLLTPGQRIDTRVVTATFKVSVSMKSAKNYKQKLYELWQALRG |
| Terminator Protein (gp12) | R | 165 | Mycolicibacterium Smegmatis Mc2 155 | AVVLPDWYEEAFVNVENLFIDMFTDLLPDYESGCWAPDDWLADEIEVKPTIWFFRLPGGRVDWDGRKDECQLQVMVVTGSRDDSWRLMDFVRAMLLPMQGDKYKMADGYTAQIRCAGEVAGPQLLTPGQRIDTRVVTATFKVSVSMKSAKNYKQKLYELWQALRG |
| Tail Tube Protein (gp13) | S | 299 | Mycolicibacterium Smegmatis Mc2 155 | TDFYTIKDAQADLAIAPLNLTVLLAPYSTTPATTLESPTDGSLAIPPGYKSVGHFEKQAGLTLGNEFDSKDIEAYGEPEPIRTIINKRTTTFDFAMYQNQRNVLELIWTQDFSNIQPSEFGGIVLEAPKVPKNIYYRAILVGMDDRNDRPIWLYWLMPKVKLDKLDNQTLNDDNVIEYKPTLKAFRDDVVGYSVAQGFAGPGWRDLVATAGFGEALTALTITPGSPTVTVATGASHTAQLLVEGDNGINYTPDVVFTSSAPDKASVSAAGLVTGVAAGSATITATKGALTATATVTVTA |
| Tail Tube Protein (gp13) | T | 299 | Mycolicibacterium Smegmatis Mc2 155 | TDFYTIKDAQADLAIAPLNLTVLLAPYSTTPATTLESPTDGSLAIPPGYKSVGHFEKQAGLTLGNEFDSKDIEAYGEPEPIRTIINKRTTTFDFAMYQNQRNVLELIWTQDFSNIQPSEFGGIVLEAPKVPKNIYYRAILVGMDDRNDRPIWLYWLMPKVKLDKLDNQTLNDDNVIEYKPTLKAFRDDVVGYSVAQGFAGPGWRDLVATAGFGEALTALTITPGSPTVTVATGASHTAQLLVEGDNGINYTPDVVFTSSAPDKASVSAAGLVTGVAAGSATITATKGALTATATVTVTA |
| Tail Tube Protein (gp13) | U | 299 | Mycolicibacterium Smegmatis Mc2 155 | TDFYTIKDAQADLAIAPLNLTVLLAPYSTTPATTLESPTDGSLAIPPGYKSVGHFEKQAGLTLGNEFDSKDIEAYGEPEPIRTIINKRTTTFDFAMYQNQRNVLELIWTQDFSNIQPSEFGGIVLEAPKVPKNIYYRAILVGMDDRNDRPIWLYWLMPKVKLDKLDNQTLNDDNVIEYKPTLKAFRDDVVGYSVAQGFAGPGWRDLVATAGFGEALTALTITPGSPTVTVATGASHTAQLLVEGDNGINYTPDVVFTSSAPDKASVSAAGLVTGVAAGSATITATKGALTATATVTVTA |
| Tail Tube Protein (gp13) | V | 299 | Mycolicibacterium Smegmatis Mc2 155 | TDFYTIKDAQADLAIAPLNLTVLLAPYSTTPATTLESPTDGSLAIPPGYKSVGHFEKQAGLTLGNEFDSKDIEAYGEPEPIRTIINKRTTTFDFAMYQNQRNVLELIWTQDFSNIQPSEFGGIVLEAPKVPKNIYYRAILVGMDDRNDRPIWLYWLMPKVKLDKLDNQTLNDDNVIEYKPTLKAFRDDVVGYSVAQGFAGPGWRDLVATAGFGEALTALTITPGSPTVTVATGASHTAQLLVEGDNGINYTPDVVFTSSAPDKASVSAAGLVTGVAAGSATITATKGALTATATVTVTA |
| Tail Tube Protein (gp13) | W | 299 | Mycolicibacterium Smegmatis Mc2 155 | TDFYTIKDAQADLAIAPLNLTVLLAPYSTTPATTLESPTDGSLAIPPGYKSVGHFEKQAGLTLGNEFDSKDIEAYGEPEPIRTIINKRTTTFDFAMYQNQRNVLELIWTQDFSNIQPSEFGGIVLEAPKVPKNIYYRAILVGMDDRNDRPIWLYWLMPKVKLDKLDNQTLNDDNVIEYKPTLKAFRDDVVGYSVAQGFAGPGWRDLVATAGFGEALTALTITPGSPTVTVATGASHTAQLLVEGDNGINYTPDVVFTSSAPDKASVSAAGLVTGVAAGSATITATKGALTATATVTVTA |
| Tail Tube Protein (gp13) | X | 299 | Mycolicibacterium Smegmatis Mc2 155 | TDFYTIKDAQADLAIAPLNLTVLLAPYSTTPATTLESPTDGSLAIPPGYKSVGHFEKQAGLTLGNEFDSKDIEAYGEPEPIRTIINKRTTTFDFAMYQNQRNVLELIWTQDFSNIQPSEFGGIVLEAPKVPKNIYYRAILVGMDDRNDRPIWLYWLMPKVKLDKLDNQTLNDDNVIEYKPTLKAFRDDVVGYSVAQGFAGPGWRDLVATAGFGEALTALTITPGSPTVTVATGASHTAQLLVEGDNGINYTPDVVFTSSAPDKASVSAAGLVTGVAAGSATITATKGALTATATVTVTA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-05-02 Deposition Author(s): Ho, M.C. , Lowary, T.L. , Maharana, J. , Tsai, L.A. , Wang, C.H.