PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8ZDA

Cryo-em structure of esacas9_nng-guide rna-target dna complex in a catalytically active state

PDB DOI: 10.2210/pdb8zda/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Staphylococcus Aureus

Deposited: 2024-05-01
Deposition Author(s): Nakagawa, R. , Nishimasu, H. , Nureki, O. , Omura, S.N. , Yamashita, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.14 Å

Literature

Cryo-em structure of esacas9_nng-guide rna-target dna complex in a catalytically active state

Nakagawa, R. , Nishimasu, H. , Nureki, O. , Omura, S.N. , Yamashita, K.

Primary Citation of Related Structures: 8ZDA


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated endonuclease Cas9 A 1056 Staphylococcus Aureus GSHMKRNYILGLDIGITSVGYGIIDYETRDVIDAGVRLFKEANVENNEGRRSKRGARRLKRRRRHRIQRVKKLLFDYNLLTDHSELSGINPYEARVKGLSQKLSEEEFSAALLHLAKRRGVHNVNEVEEDTGNELSTKEQISRNSKALEEKYVAELQLERLKKDGEVRGSINRFKTSDYVKEAKQLLKVQKAYHQLDQSFIDTYIDLLETRRTYYEGPGEGSPFGWKDIKEWYEMLMGHCTYFPEELRSVKYAYNADLYNALNDLNNLVITRDENEKLEYYEKFQIIENVFKQKKKPTLKQIAKEILVNEEDIKGYRVTSTGKPEFTNLKVYHDIKDITARKEIIENAELLDQIAKILTIYQSSEDIQEELTNLNSELTQEEIEQISNLKGYTGTHNLSLKAINLILDELWHTNDAQIAIFNALKLVPKKVDLSQQKEIPTTLVDDFILSPVVKRSFIQSIKVINAIIKKYGLPNDIIIELAREKNSKDAQKMINEMQKRNRQTNERIEEIIRTTGKENAKYLIEKIKLHDMQEGKCLYSLEAIPLEDLLNNPFNYEVDHIIPRSVSFDNSFNNKVLVKQEENSKKGNRTPFQYLSSSDSKISYETFKKHILNLAKGKGRISKTKKEYLLEERDINRFSVQKDFINRNLVDTRYATRGLMNLLRSYFRVNNLDVKVKSINGGFTSFLRRKWKFKKERNKGYKHHAEDALIIANADFIFKEWKKLDKAKKVMENQMFEEKQAESMPEIETEQEYKEIFITPHQIKHIKDFKDYKYSHRVDKKPNRKLINDTLYSTRKDDKGNTRIVNNLNGLYDKDNDKLKKLINKSPEKLLMYHHDPQTYQKLKLIMEQYGDEKNPLYKYYEETGNYLTKYSKKDNGPVIKKIKYYGNKLNAHLDITDDYPNSRNKVVKLSLKPYRFDVYLDNGVYKFVKVNNLDVIKKENYYEVNSKCYEEAKKLKKISNQAEFIASFYRNDLIKINGELYRVIGVASDLLNAIEVNMIDITYREYLENMNDKRPPRIFKTISSKTQSIKKYSTDILGNLYEVKSKKHPQIIKKG

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
sgRNA b 99 NA GGGAAAUUAGGUGCGCUUGGCGUUUUAGUACUCUGGAAACAGAAUCUACUAAAACAAGGCAAAAUGCCGUGUUUAUCUCGUCAACUUGUUGGCGAGAUA
Target DNA strand1 c 17 NA ATTTGAATAGGCAAGCC
Non-target DNA strand d 43 NA CTAAATACGGGAAATTAGGTGCGCTTGGCTTGCCTATTCAAAT
Target DNA strand2 e 26 NA AAGCGCACCTAATTTCCCGTATTTAG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-05-01
Deposition Author(s): Nakagawa, R. , Nishimasu, H. , Nureki, O. , Omura, S.N. , Yamashita, K.