PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8ZC5

Sars-cov-2 omicron ba.4 spike trimer (6p) in complex with d1f6 fab, focused refinement of rbd region

PDB DOI: 10.2210/pdb8zc5/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2024-04-28
Deposition Author(s): Chen, Q. , Gao, X. , He, J. , Li, Z. , Liu, B. , Xiong, X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.91 Å

8zc5
Literature

Sars-cov-2 omicron ba.4 spike trimer (6p) in complex with d1f6 fab, focused refinement of rbd region

Chen, Q. , Gao, X. , He, J. , Li, Z. , Liu, B. , Xiong, X.

Primary Citation of Related Structures: 8ZC5


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 A 196 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 ITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGVNCYFPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGP
Spike protein S1 B 196 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 ITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGVNCYFPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGP
Light chain of D1F6 Fab C 110 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QPVLTQPPSASGPPGQSVSISCSGSRSNIGTNFVYWYQQLPGAAPKLLIYKNDQRPSGVPERFFGSKSGTSASLAISGLRSEDEVDYYCAAWDDSLSGHVFGAGTKVTVL
Light chain of D1F6 Fab D 110 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QPVLTQPPSASGPPGQSVSISCSGSRSNIGTNFVYWYQQLPGAAPKLLIYKNDQRPSGVPERFFGSKSGTSASLAISGLRSEDEVDYYCAAWDDSLSGHVFGAGTKVTVL
Heavy chain of D1F6 Fab E 127 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVQSGAEVKKPGASVKVSCKASGYIFSDYNIHWVRQAPGQGLEWMGWISPDSDDTNYAQSFQGRVTMTRDTSITTVYMELSSLRSDDTAVYFCARSVGYCSLNSCQRWMWFDTWGQGALVTVSS
Heavy chain of D1F6 Fab F 127 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVQSGAEVKKPGASVKVSCKASGYIFSDYNIHWVRQAPGQGLEWMGWISPDSDDTNYAQSFQGRVTMTRDTSITTVYMELSSLRSDDTAVYFCARSVGYCSLNSCQRWMWFDTWGQGALVTVSS
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-04-28
Deposition Author(s): Chen, Q. , Gao, X. , He, J. , Li, Z. , Liu, B. , Xiong, X.