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FASTA Sequence PDB Format mmCIF Format
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8ZC1

Sars-cov-2 omicron ba.2 spike trimer (6p) in complex with d1f6 fab, focused refinement of rbd region

PDB DOI: 10.2210/pdb8zc1/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2024-04-28
Deposition Author(s): Chen, Q. , Gao, X. , He, J. , Li, Z. , Liu, B. , Xiong, X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.17 Å

8zc1
Literature

Sars-cov-2 omicron ba.2 spike trimer (6p) in complex with d1f6 fab, focused refinement of rbd region

Chen, Q. , Gao, X. , He, J. , Li, Z. , Liu, B. , Xiong, X.

Primary Citation of Related Structures: 8ZC1


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 B 196 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 ITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGP
Light chain of D1F6 Fab C 223 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QPVLTQPPSASGPPGQSVSISCSGSRSNIGTNFVYWYQQLPGAAPKLLIYKNDQRPSGVPERFFGSKSGTSASLAISGLRSEDEVDYYCAAWDDSLSGHVFGAGTKVTVLGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Heavy chain of D1F6 Fab E 230 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVQSGAEVKKPGASVKVSCKASGYIFSDYNIHWVRQAPGQGLEWMGWISPDSDDTNYAQSFQGRVTMTRDTSITTVYMELSSLRSDDTAVYFCARSVGYCSLNSCQRWMWFDTWGQGALVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-04-28
Deposition Author(s): Chen, Q. , Gao, X. , He, J. , Li, Z. , Liu, B. , Xiong, X.