PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8Z9H

Cryo-em structure of thogoto virus polymerase in a transcription elongation-reception conformation

PDB DOI: 10.2210/pdb8z9h/pdb

Classification: TRANSCRIPTION
Organism(s): Thogoto Virus (Isolate Siar 126) , Synthetic Construct

Deposited: 2024-04-23
Deposition Author(s): Chang, T. , Chen, X. , He, J. , Li, M. , Li, Z. , Xiong, X. , Xue, L. , Zhao, H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.7 Å

8z9h
Literature

Cryo-em structure of thogoto virus polymerase in a transcription elongation-reception conformation

Chang, T. , Chen, X. , He, J. , Li, M. , Li, Z. , Xiong, X. , Xue, L. , Zhao, H.

Primary Citation of Related Structures: 8Z9H


Proteins
Molecule Chains Sequence Length Organism Sequence
Polymerase acidic protein A 622 Thogoto Virus (Isolate Siar 126) , Synthetic Construct MTDRPDHIDSRVWELSETQEDWITQVHGHVRRVVECWKYTICCLISNMHTHRGAPQYDVFKWQDRSTIEWICSKKKVQYPERDTPDLYDNERAVAYKVLLVSDLSDHSPTSGIYHDLAFNLEGEAEESCALVLRGSQLQDIKGFLCRALEWVVSNNLTQEVVETISGEAKLQFSVGTTFRTLLKRDTDWDVIPTPRVEPNVPRIEGRRWTQMKKLPLLKEKEGPPSPWRALLLGADSEYIVCPPGTDQEAISWIHSQSEIECIRESKSTPASVITCLTSSLQSFAEGNPVRSRIHEDIIAFGINKKQEKKQSASSSASGEWKRAEYQVEEMSLPPWVEEEMVLLRSDQEDNWIELEKNAIYTEVDGVAEGLVDKYIEIVGRTKVASVIEKWQIAATRTFSQLHTDRSRITACPIITRDPSGNCQFWGMVLLGPHHVKRDTDNAPLLIAEIMGEDTEEKYPKHSVFSLKVEEKQFLLSLKITSFSRNKLYTFSNIRRVLIQPASIYSQVVLSRAAENNSLNLEVNPEIQLYLEGAQRGMTLYQWVRMILCLEFLMAIYNNPQMEGFLANMRRLHMSRHAMMERRQVFLPFGSRPEDKVNECIINNPIVAYLAKGWNSMPNVYY
Polymerase acidic protein H 622 Thogoto Virus (Isolate Siar 126) , Synthetic Construct MTDRPDHIDSRVWELSETQEDWITQVHGHVRRVVECWKYTICCLISNMHTHRGAPQYDVFKWQDRSTIEWICSKKKVQYPERDTPDLYDNERAVAYKVLLVSDLSDHSPTSGIYHDLAFNLEGEAEESCALVLRGSQLQDIKGFLCRALEWVVSNNLTQEVVETISGEAKLQFSVGTTFRTLLKRDTDWDVIPTPRVEPNVPRIEGRRWTQMKKLPLLKEKEGPPSPWRALLLGADSEYIVCPPGTDQEAISWIHSQSEIECIRESKSTPASVITCLTSSLQSFAEGNPVRSRIHEDIIAFGINKKQEKKQSASSSASGEWKRAEYQVEEMSLPPWVEEEMVLLRSDQEDNWIELEKNAIYTEVDGVAEGLVDKYIEIVGRTKVASVIEKWQIAATRTFSQLHTDRSRITACPIITRDPSGNCQFWGMVLLGPHHVKRDTDNAPLLIAEIMGEDTEEKYPKHSVFSLKVEEKQFLLSLKITSFSRNKLYTFSNIRRVLIQPASIYSQVVLSRAAENNSLNLEVNPEIQLYLEGAQRGMTLYQWVRMILCLEFLMAIYNNPQMEGFLANMRRLHMSRHAMMERRQVFLPFGSRPEDKVNECIINNPIVAYLAKGWNSMPNVYY
RNA-directed RNA polymerase catalytic subunit B 710 Thogoto Virus (Isolate Siar 126) , Synthetic Construct MNLFTPLSEINPTTTQELLYAYTGPAPVAYGTRTRAVLENIIRPYQYFYKEPNVQRALDIKTGCKEPEDINVEGPSSGFHTASVLKLADNFFRKYRPAMEKLKYWILVKLPKLKYAELSKGRQTYSFIHKRNLPAPIALEETVEFLEQNLRRKIGPTLLSYCQAIADVMELDETTYEGARDPRPWDIQLEEIDSDEEDPLFRQVGREETYTIKFSREELWDQMRTLNTMWKHLERGRLNRRTIATPSMLIRGFVKIVEDAAKEILENVPTSGVPVGGEEKLAKLASKQTFHTAVTGELSGDQEKFNECLDPDAMRLMWTVFLRKLGCPDWIMELFNIPFMVFKSKLADMGEGLVYTKGKLTDRKPLGEMPSEFDDLVRNVVGNSISCRLGMFMGMYNLTSTLLALISIEREELTGSHVESSDDFIHFFNCKTHEEMFKQAETLRLTLKLVGINMSPSKCILISPAGIGEFNSKFHHRDFVGNVATELPALVPNGTNPMTDLAMGLNVIKHSVNTGQMNLCTGALAMRIFNHAYKYAYMALGVTRRTRFMEENAITPLLTNQGASPVHSFSTMHLDEVALRRHLGLLDEETLRRILNPNNPVTQKGDPSMFFRIENKMPQIMEDYSVPSCFKYTLSRNRTIQDKPHKALLNKEERYQRVTSIINKLFPEVLIQEASAPGTVRESLKRRLELVVERSDLDEERKKRILSRIF
RNA-directed RNA polymerase catalytic subunit I 710 Thogoto Virus (Isolate Siar 126) , Synthetic Construct MNLFTPLSEINPTTTQELLYAYTGPAPVAYGTRTRAVLENIIRPYQYFYKEPNVQRALDIKTGCKEPEDINVEGPSSGFHTASVLKLADNFFRKYRPAMEKLKYWILVKLPKLKYAELSKGRQTYSFIHKRNLPAPIALEETVEFLEQNLRRKIGPTLLSYCQAIADVMELDETTYEGARDPRPWDIQLEEIDSDEEDPLFRQVGREETYTIKFSREELWDQMRTLNTMWKHLERGRLNRRTIATPSMLIRGFVKIVEDAAKEILENVPTSGVPVGGEEKLAKLASKQTFHTAVTGELSGDQEKFNECLDPDAMRLMWTVFLRKLGCPDWIMELFNIPFMVFKSKLADMGEGLVYTKGKLTDRKPLGEMPSEFDDLVRNVVGNSISCRLGMFMGMYNLTSTLLALISIEREELTGSHVESSDDFIHFFNCKTHEEMFKQAETLRLTLKLVGINMSPSKCILISPAGIGEFNSKFHHRDFVGNVATELPALVPNGTNPMTDLAMGLNVIKHSVNTGQMNLCTGALAMRIFNHAYKYAYMALGVTRRTRFMEENAITPLLTNQGASPVHSFSTMHLDEVALRRHLGLLDEETLRRILNPNNPVTQKGDPSMFFRIENKMPQIMEDYSVPSCFKYTLSRNRTIQDKPHKALLNKEERYQRVTSIINKLFPEVLIQEASAPGTVRESLKRRLELVVERSDLDEERKKRILSRIF
Polymerase basic protein 2 C 827 Thogoto Virus (Isolate Siar 126) , Synthetic Construct MDREEPAESECTLRALVEEYNGACKEAPKEMSKQFTDYNTFKRYTTSKKDHAPQMRLVYSVRKPWPISMTPSKEIPLVFNGTKLKDTILDLGESKRTRANIVVPDYWSKYGSQTSLEVVNAILYAEDLKVQRFFSTEWGEIRYGRMLPFRKPVQACPTIEEVNPASIPHTLLQVFCPQYTTLDSKRKAHMGAVEKLKRVMEPICKVQTQESAVHIARSLIDSNKKWLPTVVDHTPRTAEMAHFLCSKYHYVHTNTQDLSDTRSIDNLCGELVKRSLKCRCPKETLVANLDKITIQGRPMREVLADHDGELPYLGICRVAMGLSTHHTMKIRSTKFSILNSDHPRIEVKKVFSLSPDVQVTIPYRRFKGKAKVYFQNDQIQGYFSCTDRQIDEIKISAPKNAPLLEPLLDICYYGSFIEPGFEQTFGFYPAGKREFVDSFFMHHSKDHKAFLIHMGLDKDLSLPLSPELNWKEPALSKVCRVTELDSTVQPYTSATREFVLGETLNVYTQHENGLELLICPTEIRSTRGPLPPGTNLSGSEFIDIYQDPFSRAKSLLKSTILHAERCKEFVGNMLEEYQDPAETTVQSLVPINTWGKSAKRKLQEEITSDPDWHQCPRKRAKMSYLAIIAGSIQDRDKKQTNVPRAFMLRGSQIEYDMKATRGLVVDTTNRIIVGGETVLREGKGGPEGYVQTGVFEEQPRCYLVDTPDHGLSMGLSRFCVHSQGRYFQYEKKISIWEETDNIKATIDSQRDLKRRRDIEEMVSKRARIVLEVLFQGPGHHHHHHHHSADYKDDDDKGGWSHPQFEKGGGSGGGGSGGSAWSHPQFEK
Polymerase basic protein 2 J 827 Thogoto Virus (Isolate Siar 126) , Synthetic Construct MDREEPAESECTLRALVEEYNGACKEAPKEMSKQFTDYNTFKRYTTSKKDHAPQMRLVYSVRKPWPISMTPSKEIPLVFNGTKLKDTILDLGESKRTRANIVVPDYWSKYGSQTSLEVVNAILYAEDLKVQRFFSTEWGEIRYGRMLPFRKPVQACPTIEEVNPASIPHTLLQVFCPQYTTLDSKRKAHMGAVEKLKRVMEPICKVQTQESAVHIARSLIDSNKKWLPTVVDHTPRTAEMAHFLCSKYHYVHTNTQDLSDTRSIDNLCGELVKRSLKCRCPKETLVANLDKITIQGRPMREVLADHDGELPYLGICRVAMGLSTHHTMKIRSTKFSILNSDHPRIEVKKVFSLSPDVQVTIPYRRFKGKAKVYFQNDQIQGYFSCTDRQIDEIKISAPKNAPLLEPLLDICYYGSFIEPGFEQTFGFYPAGKREFVDSFFMHHSKDHKAFLIHMGLDKDLSLPLSPELNWKEPALSKVCRVTELDSTVQPYTSATREFVLGETLNVYTQHENGLELLICPTEIRSTRGPLPPGTNLSGSEFIDIYQDPFSRAKSLLKSTILHAERCKEFVGNMLEEYQDPAETTVQSLVPINTWGKSAKRKLQEEITSDPDWHQCPRKRAKMSYLAIIAGSIQDRDKKQTNVPRAFMLRGSQIEYDMKATRGLVVDTTNRIIVGGETVLREGKGGPEGYVQTGVFEEQPRCYLVDTPDHGLSMGLSRFCVHSQGRYFQYEKKISIWEETDNIKATIDSQRDLKRRRDIEEMVSKRARIVLEVLFQGPGHHHHHHHHSADYKDDDDKGGWSHPQFEKGGGSGGGGSGGSAWSHPQFEK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (5'-R(*AP*GP*AP*GP*AP*AP*AP*UP*CP*AP*AP*GP*GP*CP*AP*GP*UP*U)-3') d 18 NA AGAGAAAUCAAGGCAGUU
RNA (5'-R(*GP*AP*CP*UP*GP*CP*CP*UP*GP*UP*UP*UP*UP*UP*GP*CP*U)-3') e 17 NA GACUGCCUGUUUUUGCU
RNA (5'-R(*GP*AP*CP*UP*GP*CP*CP*UP*GP*UP*UP*UP*UP*UP*GP*CP*U)-3') f 17 NA GACUGCCUGUUUUUGCU
RNA (5'-R(P*GP*CP*AP*AP*AP*AP*AP*CP*A)-3') g 9 NA GCAAAAACA
RNA (5'-R(P*GP*CP*AP*AP*AP*AP*AP*CP*A)-3') k 9 NA GCAAAAACA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-04-23
Deposition Author(s): Chang, T. , Chen, X. , He, J. , Li, M. , Li, Z. , Xiong, X. , Xue, L. , Zhao, H.