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FASTA Sequence PDB Format mmCIF Format
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8Z79

Crystal structure of 5-n-alpha-glycinylthymidine (n-alpha-glyt) fad-dependent lyase gp47/ngto from pseudomonas phage pamx11 in complex with dsdna

PDB DOI: 10.2210/pdb8z79/pdb

Classification: OXIDOREDUCTASE/DNA
Organism(s): Pseudomonas Phage Pamx11 , Synthetic Construct

Deposited: 2024-04-19
Deposition Author(s): Guo, W.T. , Wen, Y. , Wu, B.X.

Downloading... [460091/1632231]
Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å

8z79
Literature

Crystal structure of 5-n-alpha-glycinylthymidine (n-alpha-glyt) fad-dependent lyase gp47/ngto from pseudomonas phage pamx11 in complex with dsdna

Guo, W.T. , Wen, Y. , Wu, B.X.

Primary Citation of Related Structures: 8Z79


Proteins
Molecule Chains Sequence Length Organism Sequence
Flavin-dependent lyase A 287 Pseudomonas Phage Pamx11 , Synthetic Construct SMKTDVIVVGAGLFGSIAAKALAQAGLAVVGVDDSRPGAGSLPAACLMKPSWFSSMGKDKFEPSLELLDRIYGVKDISFKVGLLRATVHWCDPAQILGDEEVPVYREKVTALTRTSSGWAVSLEGREAALEARSVVVAAGVWTSELVRSQALGGLVGRAGVAFRWQDMQLEEQFISPWAPYRQTVGFNISPTEVWVGDGSAIKPENWNQDRQNVSYSRCAQAIDRAGFGDQEAGRVKALYGIRPYIAGVVPCLLEEVEPGLWALTGGAKNGTISAGWAASELVRRIK
Flavin-dependent lyase B 287 Pseudomonas Phage Pamx11 , Synthetic Construct SMKTDVIVVGAGLFGSIAAKALAQAGLAVVGVDDSRPGAGSLPAACLMKPSWFSSMGKDKFEPSLELLDRIYGVKDISFKVGLLRATVHWCDPAQILGDEEVPVYREKVTALTRTSSGWAVSLEGREAALEARSVVVAAGVWTSELVRSQALGGLVGRAGVAFRWQDMQLEEQFISPWAPYRQTVGFNISPTEVWVGDGSAIKPENWNQDRQNVSYSRCAQAIDRAGFGDQEAGRVKALYGIRPYIAGVVPCLLEEVEPGLWALTGGAKNGTISAGWAASELVRRIK
Flavin-dependent lyase C 287 Pseudomonas Phage Pamx11 , Synthetic Construct SMKTDVIVVGAGLFGSIAAKALAQAGLAVVGVDDSRPGAGSLPAACLMKPSWFSSMGKDKFEPSLELLDRIYGVKDISFKVGLLRATVHWCDPAQILGDEEVPVYREKVTALTRTSSGWAVSLEGREAALEARSVVVAAGVWTSELVRSQALGGLVGRAGVAFRWQDMQLEEQFISPWAPYRQTVGFNISPTEVWVGDGSAIKPENWNQDRQNVSYSRCAQAIDRAGFGDQEAGRVKALYGIRPYIAGVVPCLLEEVEPGLWALTGGAKNGTISAGWAASELVRRIK
Flavin-dependent lyase D 287 Pseudomonas Phage Pamx11 , Synthetic Construct SMKTDVIVVGAGLFGSIAAKALAQAGLAVVGVDDSRPGAGSLPAACLMKPSWFSSMGKDKFEPSLELLDRIYGVKDISFKVGLLRATVHWCDPAQILGDEEVPVYREKVTALTRTSSGWAVSLEGREAALEARSVVVAAGVWTSELVRSQALGGLVGRAGVAFRWQDMQLEEQFISPWAPYRQTVGFNISPTEVWVGDGSAIKPENWNQDRQNVSYSRCAQAIDRAGFGDQEAGRVKALYGIRPYIAGVVPCLLEEVEPGLWALTGGAKNGTISAGWAASELVRRIK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*TP*AP*GP*TP*CP*AP*TP*GP*AP*CP*T)-3') e 11 NA TAGTCATGACT
DNA (5'-D(*TP*AP*GP*TP*CP*AP*TP*GP*AP*CP*T)-3') f 11 NA TAGTCATGACT
DNA (5'-D(*TP*AP*GP*TP*CP*AP*TP*GP*AP*CP*T)-3') g 11 NA TAGTCATGACT
DNA (5'-D(*TP*AP*GP*TP*CP*AP*TP*GP*AP*CP*T)-3') h 11 NA TAGTCATGACT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2024-04-19
Deposition Author(s): Guo, W.T. , Wen, Y. , Wu, B.X.