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8YY9

Cryo-em structure of a tri-heme cytochrome-associated rc-lh1 complex from a marine photoheterotrophic bacterium, purified with magnesium-free solutions.

PDB DOI: 10.2210/pdb8yy9/pdb

Classification: PHOTOSYNTHESIS
Organism(s): Dinoroseobacter Shibae Dfl 12 = Dsm 16493

Deposited: 2024-04-03
Deposition Author(s): Chen, J.H. , Zhang, X. , Zheng, Q.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.7 Å

8yy9
Literature

Cryo-em structure of a tri-heme cytochrome-associated rc-lh1 complex from a marine photoheterotrophic bacterium, purified with magnesium-free solutions.

Chen, J.H. , Zhang, X. , Zheng, Q.

Primary Citation of Related Structures: 8YY9


Proteins
Molecule Chains Sequence Length Organism Sequence
Antenna pigment protein beta chain P 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain V 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain S 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain T 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain Q 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain R 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein alpha chain 1 53 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MSKFYKIWLIFDPRRVFVAQGVFLFLLAAMIHLVLLSTEHFNWFELAAANAAM
Antenna pigment protein beta chain N 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain K 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain J 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain I 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain G 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain F 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain E 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain D 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain B 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Antenna pigment protein beta chain A 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Reaction center protein O chain O 239 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MATQRKDMTCTITCWGIGVLLGIMTTVGLMVVGWSFLQGAFMGVLAWLIVGGVLAVAVCGETGRPKDNAEQIRAEMAAARERVRGATPGITPKPAPSVPADVRSKVQPSAALAGEAELAGRKGSWSYDSGAGHASGAGHDAGTDAAKPATLTAARDGKADDLKKIKGVGPKLEEMLHSMGFYHFDQVASWSEQELAWVDENLEGFKGRASRDEWVAQAKLLAQGGETEFSKRVDGGDVY
Antenna pigment protein beta chain 2 49 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MADKSDLSFTGLTDEQAQELHSVYMSGLWLFSAVAVVAHLATFIWRPWF
Reaction center protein M chain M 330 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MPEYQNIFTQVQVQGPAELGVDNENNLTEERTTGTGFSQLIGWIGNAQLGPIYLGWFGIISLVTGTLWFNIVGFNMLSQVGYSIPEFIRQLFWLALEPPSPEYGLRMPPLDDGGWFIIASFFLLVSVISWWLRSYQLAEMHKMGKHVAWAFAAAIWLFLVLGLFRPILMGSWSEAVPYGIFPHLDWTTAFSIRYGNLYYNPFHALSIVFLYGSVLLFAMHGATILAVTRFGGDRELEQIYDRGTASERAGLFWRWTMGFNATMEGIHRWAWWFAVLTPITGGIGILLTGTVVDNWFLWAVEHNFAPDYTQDYGYEAYTTYDGFLGREEGN
Reaction center protein L chain L 279 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MALLSFERKYRVRGGTLIGGDLFDFWVGPFYVGFFGVTTAFFALLGTILIFWGASQQGTFNPWLINIAPPDLSYGLGMAPLMEGGLWQIITICAIGAFVSWALREVEICRKLGMGYHVPFAFSVAIFAYVTLVVFRPLLMGAWGHGFPYGIWSHLDWVSNTGYAYLHFHYNPAHMIAVTFFFTTTLALALHGALVLSAANPPKGEEVKGPDNEDTFFRDFIGYSIGTLGIHRVGLLLALNAGFWSAVCIIISGPVWTKGWPEWWNWWLEMPIWPSQVGL
Reaction center protein H chain H 256 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MEETFFGNFDLASLSLWLFYGFFALLIYYLQTENMREGYPLEDDDGNTAANQGPFPLPKEKTFKLQHGRGELTLPGEDVQRRDNLALRKTAHGNGFPMEPTGDPMLDGVGPASWSKRRDVPELDAHGHPKIVPMSAAEGFGVSAGTDPRGLPVMAGDGEIVGLVSDMWIDEAEQLVRYLEIELDPEWGDGKRLVQREMVRIKSDRVKVRSIYGKHFKNVPKTKSPNQVTLLEEDKIMAYYAGGTLYADESRLEPQL
Photosynthetic reaction center cytochrome c subunit C 360 Dinoroseobacter Shibae Dfl 12 = Dsm 16493 MLPKWFDEWNSKNPTDIYKPAIVVGVAGGAVFAAALLVSWGQPLATDSMQTGPRGTGMSVPEFVSDLDTPDPTIEVFLASTSDPVIPEEGAQTAGEAYENVDPVLADLTVENYDRLLAAMRSWTGIPDLLEDPDHYQSKVAINMIQMNQTINEEWAGHVYANAEVGVTCFTCHRGQAVPSEVWYRIDPVTENTSGWASVQNRATSLSQFTSLPSDALYQYLLNYEQIAVHDLESRVETLPGDPTWQNTERTYSLMNYFSNSLGRNCVFCHNSRAFYDPAQHTPQWATAMLGISMVQELNNEWIVPIGEAHLPPERLGPVYNDVPKLACKTCHKGYQQPLQGLNVVADWPELATTEGPFYD
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-04-03
Deposition Author(s): Chen, J.H. , Zhang, X. , Zheng, Q.