8YWX
The complex structure of the h4b6 fab with the rbd of omicron ba.5 s protein
PDB DOI: 10.2210/pdb8ywx/pdb
Classification: VIRAL PROTEIN/IMMUNE SYSTEM Organism(s): Salmonella Enterica , Gammaretrovirus
Deposited: 2024-04-01 Deposition Author(s): Xia, L.Y. , Zhang, Y.Y. , Zhou, Q.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.4 Å
The complex structure of the h4b6 fab with the rbd of omicron ba.5 s protein
Xia, L.Y. , Zhang, Y.Y. , Zhou, Q.
Primary Citation of Related Structures: 8YWX
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| H4B6 Fab's heavy chain | E | 707 | Salmonella Enterica , Gammaretrovirus | EVQLVESGGDLVQPGGSLRLSCAASGFIVSRNYMSWVRQAPGKGLEWVSSIYSGGSTFYAGSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARDIPRHGGDSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGKGGGGSGGGGSGGGGEVQLVESGGGLVQPGWSLRLSCVVSGLKFDDFAMHWVRQVPGKGLEWVSGLNWNGDNVAFADSVKGRFTISRDNAENSLYLQMNNLRPEDTAFYYCAKDSYYDILTGYSGAFDMWGQGTMVTVSSGGGGSGGGGSGGGGAIRMTQSPATLSLSPGERATLSCRASQSVHNYLAWYQQKPGQAPRLLFYDASNRATGIPARFSASASGTDSTLTISSLEPEDFAVYYCQQRRNGYSFGQGTKVEIKR |
| H4B6 Fab's light chain | D | 214 | Salmonella Enterica , Gammaretrovirus | AIRMTQSPASLSASIGDRVTITCQASQDINKYLNWYQQKPGKAPRLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Spike protein S2' | A | 1120 | Salmonella Enterica , Gammaretrovirus | AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESDFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGVNCYFPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEYVNSSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-04-01 Deposition Author(s): Xia, L.Y. , Zhang, Y.Y. , Zhou, Q.