PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8YWH

Cryo-em structure of small and dead form sacas9-rna-dna ternary complex (sdcas9)

PDB DOI: 10.2210/pdb8ywh/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Staphylococcus Aureus , Synthetic Construct

Deposited: 2024-03-31
Deposition Author(s): Hyun, J. , Kang, E.S. , Kim, N.H. , Kim, Y.H. , Thach, T.T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.97 Å

8ywh
Literature

Cryo-em structure of small and dead form sacas9-rna-dna ternary complex (sdcas9)

Hyun, J. , Kang, E.S. , Kim, N.H. , Kim, Y.H. , Thach, T.T.

Primary Citation of Related Structures: 8YWH


Proteins
Molecule Chains Sequence Length Organism Sequence
sCas9 (Compact SaCas9) A 886 Staphylococcus Aureus , Synthetic Construct MKRNYILGLAIGITSVGYGIIDYETRDVIDAGVRLFKEANVENNEGRRSKRGARRLKRRRRHRIQRVKKLLFDYNLLTDHSELSGINPYEARVKGLSQKLSEEEFSAALLHLAKRRGVHNVNEVEEDTGNELSTKEQISRNSKALEEKYVAELQLERLKKDGEVRGSINRFKTSDYVKEAKQLLKVQKAYHQLDQSFIDTYIDLLETRRTYYEGPGEGSPFGWKDIKEWYEMLMGHCTYFPEELRSVKYAYNADLYNALNDLNNLVITRDENEKLEYYEKFQIIENVFKQKKKPTLKQIAKEILVNEEDIKGYRVTSTGKPEFTNLKVYHDIKDITARKEIIENAELLDQIAKILTIYQSSEDIQEELTNLNSELTQEEIEQISNLKGYTGTHNLSLKAINLILDELWHTNDNQIAIFNRLKLVPKKVDLSQQKEIPTTLVDDFILSPVVKRSFIQSIKVINAIIKKYGLPNDIIIELARGGSYATRGLMNLLRSYFRVNNLDVKVKSINGGFTSFLRRKWKFKKERNKGYKHHAEDALIIANADFIFKEWKKLDKAKKVMENQMFEEKQAESMPEIETEQEYKEIFITPHQIKHIKDFKDYKYSHRVDKKPNRELINDTLYSTRKDDKGNTLIVNNLNGLYDKDNDKLKKLINKSPEKLLMYHHDPQTYQKLKLIMEQYGDEKNPLYKYYEETGNYLTKYSKKDNGPVIKKIKYYGNKLNAHLDITDDYPNSRNKVVKLSLKPYRFDVYLDNGVYKFVTVKNLDVIKKENYYEVNSKCYEEAKKLKKISNQAEFIASFYNNDLIKINGELYRVIGVNNDLLNRIEVNMIDITYREYLENMNDKRPPRIIKTIASKTQSIKKYSTDILGNLYEVKSKKHPQIIKKG

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
sgRNA b 98 NA GAUCUGAGUCCGGUAGCGCUAGUUUUAGUACUCUGGAAACAGAAUCUACUAAAACAAGGCAAAAUGCCGUGUUUAUCUCGUCAACUUGUUGGCGAGAU
Target DNA c 59 NA GAACCGTCAGATCCGCTAGCGCTACCGGACTCAGATCTCGAGTTCAAGCTTCGAATTCT
Non-target DNA d 59 NA AGAATTCGAAGCTTGAACTCGAGATCTGAGTCCGGTAGCGCTAGCGGATCTGACGGTTC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-03-31
Deposition Author(s): Hyun, J. , Kang, E.S. , Kim, N.H. , Kim, Y.H. , Thach, T.T.