8YVO
Crystal structure of the c. difficile toxin a crops domain fragment 2639-2707 bound to c4.2 nanobody
PDB DOI: 10.2210/pdb8yvo/pdb
Classification: TOXIN/IMMUNE SYSTEM Organism(s): Camelus Dromedarius , Clostridioides Difficile
Deposited: 2024-03-28 Deposition Author(s): Belyi, Y.F. , Boyko, K.M. , Gintsburg, A.L. , Logunov, D.Y. , Popov, V.O. , Shcheblyakov, D.V. , Sluchanko, N.N. , Varfolomeeva, L.A.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.1 Å
Crystal structure of the c. difficile toxin a crops domain fragment 2639-2707 bound to c4.2 nanobody
Belyi, Y.F. , Boyko, K.M. , Gintsburg, A.L. , Logunov, D.Y. , Popov, V.O. , Shcheblyakov, D.V. , Sluchanko, N.N. , Varfolomeeva, L.A.
Primary Citation of Related Structures: 8YVO
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| C4.2 nanobody | A | 173 | Camelus Dromedarius , Clostridioides Difficile | MKYLLPTAAAGLLLLAAQPAMAEVQLVESGGGSVQAGGSLRLSCAASAFGNYMGWFRQAPGKEREGVAAIRTGGGSTYYTDSVKGRFTISQDKAKNTVYLQMNSLKPEDTAMYVCATAGDRWHATDAFILRDFVYEYWGQGTQVTVSSAAAEQKLISEEDLNGAAHHHHHHGS |
| C4.2 nanobody | B | 173 | Camelus Dromedarius , Clostridioides Difficile | MKYLLPTAAAGLLLLAAQPAMAEVQLVESGGGSVQAGGSLRLSCAASAFGNYMGWFRQAPGKEREGVAAIRTGGGSTYYTDSVKGRFTISQDKAKNTVYLQMNSLKPEDTAMYVCATAGDRWHATDAFILRDFVYEYWGQGTQVTVSSAAAEQKLISEEDLNGAAHHHHHHGS |
| Toxin A | C | 69 | Camelus Dromedarius , Clostridioides Difficile | AIRYQNRFLHLLGKIYYFGNNSKAVTGWQTINGKVYYFMPDTAMAAAGGLFEIDGVIYFFGVDGVKAMG |
| Toxin A | D | 69 | Camelus Dromedarius , Clostridioides Difficile | AIRYQNRFLHLLGKIYYFGNNSKAVTGWQTINGKVYYFMPDTAMAAAGGLFEIDGVIYFFGVDGVKAMG |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2024-03-28 Deposition Author(s): Belyi, Y.F. , Boyko, K.M. , Gintsburg, A.L. , Logunov, D.Y. , Popov, V.O. , Shcheblyakov, D.V. , Sluchanko, N.N. , Varfolomeeva, L.A.