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FASTA Sequence PDB Format mmCIF Format
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8YV8

Cryo-em structure of cdca7 bound to nucleosome including hemimethylated cpg site in widom601 positioning sequence.

PDB DOI: 10.2210/pdb8yv8/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2024-03-28
Deposition Author(s): Arita, K. , Funabiki, H. , Kikuchi, A. , Nishiyama, A. , Shikimachi, R.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.0 Å

Literature

Cryo-em structure of cdca7 bound to nucleosome including hemimethylated cpg site in widom601 positioning sequence.

Arita, K. , Funabiki, H. , Kikuchi, A. , Nishiyama, A. , Shikimachi, R.

Primary Citation of Related Structures: 8YV8


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.1 A 135 Homo Sapiens , Synthetic Construct ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.1 E 135 Homo Sapiens , Synthetic Construct ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 102 Homo Sapiens , Synthetic Construct SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 102 Homo Sapiens , Synthetic Construct SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1-B/E C 129 Homo Sapiens , Synthetic Construct SGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2A type 1-B/E G 129 Homo Sapiens , Synthetic Construct SGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2B type 1-K D 125 Homo Sapiens , Synthetic Construct PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B type 1-K H 125 Homo Sapiens , Synthetic Construct PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Cell division cycle-associated protein 7 K 108 Homo Sapiens , Synthetic Construct RSLGSTCHQCRQKTIDTKTNCRNPDCWGVRGQFCGPCLRNRYGEEVRDALLDPNWHCPPCRGICNCSFCRQRDGRSATGVLVYLAKYHGFGNVHAYLKSLKQEFEMQA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (132-MER) i 145 NA ATCAGAATCCCGGTCGCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCGAT
DNA (132-MER) j 145 NA ATCGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGCGACCGGGATTCTGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-03-28
Deposition Author(s): Arita, K. , Funabiki, H. , Kikuchi, A. , Nishiyama, A. , Shikimachi, R.