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8YS7

Crystal structure of actinomycin d and echinomycin-d(acgggct/agccccgt) complex

PDB DOI: 10.2210/pdb8ys7/pdb

Classification: DNA/ANTIBIOTIC
Organism(s): Streptomyces , Synthetic Construct

Deposited: 2024-03-22
Deposition Author(s): Hou, M.H. , Lee, Y.Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.24 Å

8ys7
Literature

Crystal structure of actinomycin d and echinomycin-d(acgggct/agccccgt) complex

Hou, M.H. , Lee, Y.Y.

Primary Citation of Related Structures: 8YS7


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*AP*GP*CP*CP*CP*CP*GP*T)-3') b 8 NA AGCCCCGT
DNA (5'-D(P*AP*GP*CP*CP*CP*CP*GP*T)-3') k 8 NA AGCCCCGT
DNA (5'-D(P*AP*CP*GP*GP*GP*CP*T)-3') c 7 NA ACGGGCT
DNA (5'-D(P*AP*CP*GP*GP*GP*CP*T)-3') l 7 NA ACGGGCT

Proteins
Molecule Chains Sequence Length Organism Sequence
Echinomycin E 8 Streptomyces , Synthetic Construct SAXVSAXV
Echinomycin A 8 Streptomyces , Synthetic Construct SAXVSAXV
actinomycin D I 11 Streptomyces , Synthetic Construct TVPGVXTVPGV
actinomycin D D 11 Streptomyces , Synthetic Construct TVPGVXTVPGV
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2024-03-22
Deposition Author(s): Hou, M.H. , Lee, Y.Y.