PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8YRM

Iota toxin ib pore serine-clamp mutant

PDB DOI: 10.2210/pdb8yrm/pdb

Classification: TOXIN
Organism(s): Clostridium Perfringens

Deposited: 2024-03-21
Deposition Author(s): Kishikawa, J. , Ninomiya, Y. , Tsuge, H. , Yamada, T. , Yoshida, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.36 Å

8yrm
Literature

Iota toxin ib pore serine-clamp mutant

Kishikawa, J. , Ninomiya, Y. , Tsuge, H. , Yamada, T. , Yoshida, T.

Primary Citation of Related Structures: 8YRM


Proteins
Molecule Chains Sequence Length Organism Sequence
Iota toxin component Ib A 528 Clostridium Perfringens EDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQSNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNST
Iota toxin component Ib B 528 Clostridium Perfringens EDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQSNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNST
Iota toxin component Ib C 528 Clostridium Perfringens EDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQSNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNST
Iota toxin component Ib D 528 Clostridium Perfringens EDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQSNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNST
Iota toxin component Ib E 528 Clostridium Perfringens EDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQSNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNST
Iota toxin component Ib F 528 Clostridium Perfringens EDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQSNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNST
Iota toxin component Ib G 528 Clostridium Perfringens EDLDTDNDNIPDAYEKNGYTIKDSIAVKWNDSFAEQGYKKYVSSYLESNTAGDPYTDYQKASGSIDKAIKLEARDPLVAAYPVVGVGMENLIISTNEHASSDQGKTVSRATTNSKTDANTVGVSISAGYQNGFTGNITTSYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGETLATIKAQDNQIGNNLSPNETYPKKGLSPLALNTMDQSNARLIPINYDQLKKLDSGKQIKLETTQVSGNYGTKNSQGQIITEGNSWSNYISQIDSVSASIILDTGSQTFERRVAAKEQGNPEDKTPEITIGEAIKKAFSATKNGELLYFNGIPIDESCVELIFDDNTSEIIKEQLKYLDDKKIYNVKLERGMNILIKVPSYFTNFDEYNNFPASWSNIDTKNQDGLQSVANKLSGETKIIIPMSKLKPYKRYVFSGYSKDPSTSNSITVNIKSKEQKTDYLVPEKDYTKFSYEFETTGKDSSDIEITLTSSGVIFLDNLSITELNST
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-03-21
Deposition Author(s): Kishikawa, J. , Ninomiya, Y. , Tsuge, H. , Yamada, T. , Yoshida, T.