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FASTA Sequence PDB Format mmCIF Format
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8YKH

Structure of sars-cov-2 spike rbd in complex with nt-108 scfv

PDB DOI: 10.2210/pdb8ykh/pdb

Classification: VIRAL PROTEIN
Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2024-03-05
Deposition Author(s): Adachi, Y. , Anraku, Y. , Hashiguchi, T. , Ito, S. , Kita, S. , Kotaki, R. , Maenaka, K. , Onodera, T. , Suzuki, T. , Tadokoro, T. , Takahashi, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.27 Å

8ykh
Literature

Structure of sars-cov-2 spike rbd in complex with nt-108 scfv

Adachi, Y. , Anraku, Y. , Hashiguchi, T. , Ito, S. , Kita, S. , Kotaki, R. , Maenaka, K. , Onodera, T. , Suzuki, T. , Tadokoro, T. , Takahashi, Y.

Primary Citation of Related Structures: 8YKH


Proteins
Molecule Chains Sequence Length Organism Sequence
NT-108 scFv A 251 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 EIVLTQSPGTLSLSPGERATLSCRASQSVSSTFLAWYQQKPGQAPRLLIYGASYMATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSLTFGGGTKLEIKGGGGSGGGGSGGGGSQVQLQQSGPGLVKPSQTLSLTCSISGDSVSSNSAAWNWIRQSPSRGLEWLGRTYYRSKWYNDYAGTVKSRIAINPDTSKNQFSLHLNSVTPEDTAVYFCARVISVAGYAFDIWGQGTMVTVSSHHHHHH
Spike glycoprotein B 1199 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 SSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPGSAGSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYI
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-03-05
Deposition Author(s): Adachi, Y. , Anraku, Y. , Hashiguchi, T. , Ito, S. , Kita, S. , Kotaki, R. , Maenaka, K. , Onodera, T. , Suzuki, T. , Tadokoro, T. , Takahashi, Y.