8YK4
Structure of sars-cov-2 rbd and antibody nt-108
PDB DOI: 10.2210/pdb8yk4/pdb
Classification: VIRAL PROTEIN Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2
Deposited: 2024-03-04 Deposition Author(s): Adachi, Y. , Anraku, Y. , Fukuhara, H. , Hashiguchi, T. , Ito, S. , Iwata, N. , Kazuki, Y. , Kita, S. , Maenaka, K. , Nagata, N. , Onodera, T. , Orba, Y. , Oshimura, M. , Sasaki, J. , Sasaki, M. , Sato, A. , Sawa, H. , Shiwa, N. , Suzuki, T. , Suzuki, T. , Tadokoro, T. , Takahashi, Y.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.2 Å
Structure of sars-cov-2 rbd and antibody nt-108
Adachi, Y. , Anraku, Y. , Fukuhara, H. , Hashiguchi, T. , Ito, S. , Iwata, N. , Kazuki, Y. , Kita, S. , Maenaka, K. , Nagata, N. , Onodera, T. , Orba, Y. , Oshimura, M. , Sasaki, J. , Sasaki, M. , Sato, A. , Sawa, H. , Shiwa, N. , Suzuki, T. , Suzuki, T. , Tadokoro, T. , Takahashi, Y.
Primary Citation of Related Structures: 8YK4
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| antibody NT-108, single chain Fv fragment | A | 282 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | MGILPSPGMPALLSLVSLLSVLLMGCVAETGEIVLTQSPGTLSLSPGERATLSCRASQSVSSTFLAWYQQKPGQAPRLLIYGASYMATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSLTFGGGTKLEIKGGGGSGGGGSGGGGSQVQLQQSGPGLVKPSQTLSLTCSISGDSVSSNSAAWNWIRQSPSRGLEWLGRTYYRSKWYNDYAGTVKSRIAINPDTSKNQFSLHLNSVTPEDTAVYFCARVISVAGYAFDIWGQGTMVTVSSHHHHHH |
| Spike protein S1 | C | 215 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | PTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKN |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2024-03-04 Deposition Author(s): Adachi, Y. , Anraku, Y. , Fukuhara, H. , Hashiguchi, T. , Ito, S. , Iwata, N. , Kazuki, Y. , Kita, S. , Maenaka, K. , Nagata, N. , Onodera, T. , Orba, Y. , Oshimura, M. , Sasaki, J. , Sasaki, M. , Sato, A. , Sawa, H. , Shiwa, N. , Suzuki, T. , Suzuki, T. , Tadokoro, T. , Takahashi, Y.