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FASTA Sequence PDB Format mmCIF Format
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8YGU

Cryo-em structure of simian rotavirus sa11 vp4 in complex with nab 7h13-i54g mutant (right side)

PDB DOI: 10.2210/pdb8ygu/pdb

Classification: VIRUS
Organism(s): Mus Musculus , Rotavirus A

Deposited: 2024-02-27
Deposition Author(s): Ge, S. , Huang, Y. , Li, S. , Sun, H. , Xia, N. , Zheng, Q.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.13 Å

8ygu
Literature

Cryo-em structure of simian rotavirus sa11 vp4 in complex with nab 7h13-i54g mutant (right side)

Ge, S. , Huang, Y. , Li, S. , Sun, H. , Xia, N. , Zheng, Q.

Primary Citation of Related Structures: 8YGU


Proteins
Molecule Chains Sequence Length Organism Sequence
Outer capsid protein VP4 A 779 Mus Musculus , Rotavirus A GYKMASLIYRQLLTNSYTVDLSDEIQEIGSTKSQNVTINPGPFAQTGYAPVNWGPGEINDSTTVEPLLDGPYQPTTFNPPVDYWMLLAPTTPGVIVEGTNNTDRWLATILIEPNVQSENRTYTIFGIQEQLTVSNTSQDQWKFIDVAKTTANGSIEQYGPLLSSPKLYAVMKHNKKLYTYEGQTPNARTGHYSTTNYDSVNMTAFCDFYIIPRSEESKCTEYINNGLPPIQNTRNVVPLSLTARDVIHYRAQANEDIVISKTSLWKEMQYNRDITIRFKFANTIIKSGGLGYKWSEISFKPANYQYTYTRDGEEVTAHTTCSVNGVNDFSFNGGSLPTDFVVSKFEVIKENSYVYIDYWDDSQAFRNVVYVRSLAANLNSVMCTGGSYNFSLPVGQWPVLTGGAVSLHSAGVTLSTQFTDFVSLNSLRFRFRLAVEEPHFKLTRTRLSRLYGLPAANPNNGKEYYEIAGRFSLISLVPSNHDYQTPIANSVTVRQDLERQLGELREEFNALSQEIAMSQLIDLALLPLDMFSMFSGIKSTIDAAKSMATNVMKKFKKSGLANSVSTLTDSLSDAASSISRGSSIRSIGSSASAWTDVSTQITDISSSVSSVSTQTSTISRRLRLKEMATQTEGMNFDDISAAVLKTKIDKSTQISPNTIPDIVTEASEKFIPNRAYRVINNDDVFEAGIDGKFFAYKVDTFEEIPFDVQKFADLVTDSPVISAIIDFKTLKNLNDNYGITKQQAFNLLRSDPRVLREFINQDNPIIRNRIEQLIMQCRL
Outer capsid protein VP4 C 779 Mus Musculus , Rotavirus A GYKMASLIYRQLLTNSYTVDLSDEIQEIGSTKSQNVTINPGPFAQTGYAPVNWGPGEINDSTTVEPLLDGPYQPTTFNPPVDYWMLLAPTTPGVIVEGTNNTDRWLATILIEPNVQSENRTYTIFGIQEQLTVSNTSQDQWKFIDVAKTTANGSIEQYGPLLSSPKLYAVMKHNKKLYTYEGQTPNARTGHYSTTNYDSVNMTAFCDFYIIPRSEESKCTEYINNGLPPIQNTRNVVPLSLTARDVIHYRAQANEDIVISKTSLWKEMQYNRDITIRFKFANTIIKSGGLGYKWSEISFKPANYQYTYTRDGEEVTAHTTCSVNGVNDFSFNGGSLPTDFVVSKFEVIKENSYVYIDYWDDSQAFRNVVYVRSLAANLNSVMCTGGSYNFSLPVGQWPVLTGGAVSLHSAGVTLSTQFTDFVSLNSLRFRFRLAVEEPHFKLTRTRLSRLYGLPAANPNNGKEYYEIAGRFSLISLVPSNHDYQTPIANSVTVRQDLERQLGELREEFNALSQEIAMSQLIDLALLPLDMFSMFSGIKSTIDAAKSMATNVMKKFKKSGLANSVSTLTDSLSDAASSISRGSSIRSIGSSASAWTDVSTQITDISSSVSSVSTQTSTISRRLRLKEMATQTEGMNFDDISAAVLKTKIDKSTQISPNTIPDIVTEASEKFIPNRAYRVINNDDVFEAGIDGKFFAYKVDTFEEIPFDVQKFADLVTDSPVISAIIDFKTLKNLNDNYGITKQQAFNLLRSDPRVLREFINQDNPIIRNRIEQLIMQCRL
Outer capsid protein VP4 B 581 Mus Musculus , Rotavirus A GYKMASLIYRQLLTNSYTVDLSDEIQEIGSTKSQNVTINPGPFAQTGYAPVNWGPGEINDSTTVEPLLDGPYQPTTFNPPVDYWMLLAPTTPGVIVEGTNNTDRWLATILIEPNVQSENRTYTIFGIQEQLTVSNTSQDQWKFIDVVKTTANGSIGQYGPLLSSPKLYAVMKHNEKLYTYEGQTPNARTAHYSTTNYDSVNMTAFCDFYIIPRSEESKCTEYINNGLPPIQNTRNVVPLSLTARDVIHYRAQANEDIVISKTSLWKEMQYNRDITIRFKFANTIIKSGGLGYKWSEISFKPANYQYTYTRDGEEVTAHTTCSVNGVNDFSFNGGSLPTDFVVSKFEVIKENSYVYIDYWDDSQAFRNVVYVRSLAANLNSVMCTGGSYNFSLPVGQWPVLTGGAVSLHSAGVTLSTQFTDFVSLNSLRFRFRLAVEEPHFKLTRTRLSRLYGLPAANPNNGKEYYEIAGRFSLISLVPSNHDYQTPIANSVTVRQDLERQLGELREEFNALSQEIAMSQLIDLALLPLDMFSMFSGIKSTIDAAKSMATNVMKKFKKSGLANSVSTLTDSLSDAASSISRG
Antibody 7H13-I54G mutant heavy chain H 116 Mus Musculus , Rotavirus A QVQLKESGPGLVAPSQSLSITCTVSGFSLSRYSVHWVRQPPGKGLEWLGMIWNGGSTDYNSALKSRLSISKDNSQSQVFLKLNSLQTDDAAIYYCARNSGFDLFDFWGQGTTLTVS
Antibody 7H13-I54G mutant light chain L 107 Mus Musculus , Rotavirus A DIVMTQSHKFMSTSVGDRVSITCKASQDVTSAVAWYQQKPGQSPKLLISSASYRYTGVPDRFSGSGSGTDFTFTISSVQAEDLAVYYCQQHYSTPPTFGAGTKLELK
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-02-27
Deposition Author(s): Ge, S. , Huang, Y. , Li, S. , Sun, H. , Xia, N. , Zheng, Q.