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FASTA Sequence PDB Format mmCIF Format
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8YGJ

Spcas9-mmlv rt-pegrna-target dna complex (elongation 28-nt)

PDB DOI: 10.2210/pdb8ygj/pdb

Classification: RNA BINDING PROTEIN/DNA/RNA
Organism(s): Moloney Murine Leukemia Virus , Streptococcus Pyogenes , Streptococcus Pyogenes Serotype M1 , Synthetic Construct

Deposited: 2024-02-26
Deposition Author(s): Hirano, H. , Hoki, M. , Itoh, Y. , Nakagawa, R. , Nureki, O. , Omura, S.N. , Shuto, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

Literature

Spcas9-mmlv rt-pegrna-target dna complex (elongation 28-nt)

Hirano, H. , Hoki, M. , Itoh, Y. , Nakagawa, R. , Nureki, O. , Omura, S.N. , Shuto, Y.

Primary Citation of Related Structures: 8YGJ


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (137-MER) b 137 NA GGCCGUAGUGCUUGCUCUGAGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCUGGAGGAAGCAGGGCAACCAAACCACAGCGUGCUCAGUCUG
DNA (51-MER) c 51 NA CTAGTACTCTGCCATCAGAGCAAGCACTACGGCCGATTGCTCTAAGTGATC
DNA (5'-D(P*TP*GP*AP*TP*GP*GP*CP*AP*GP*AP*GP*TP*AP*CP*TP*AP*G)-3') d 17 NA TGATGGCAGAGTACTAG
DNA (62-MER) f 62 NA GATCACTTAGAGCAATCGGCCCAGACTGAGCACGCTGTGGTTTGGTTGCCCTGCTTCCTCCA

Proteins
Molecule Chains Sequence Length Organism Sequence
Gag-Pol polyprotein E 496 Moloney Murine Leukemia Virus , Streptococcus Pyogenes , Streptococcus Pyogenes Serotype M1 , Synthetic Construct TLNIEDEYRLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFNEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGKAGFCRLFIPGFAEMAAPLYPLTKPGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTDRVQFGPVVALNPATLLPLPEEGLQHNCL
CRISPR-associated endonuclease Cas9/Csn1 A 1367 Moloney Murine Leukemia Virus , Streptococcus Pyogenes , Streptococcus Pyogenes Serotype M1 , Synthetic Construct DKKYSIGLAIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHSIKKNLIGALLFDSGETAEATRLKRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAYHEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTYNQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNFDLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNTEITKAPLSASMIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMDGTEELLVKLNREDLLRKQRTFDNGSIPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRIPYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHSLLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFDSVEISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYAHLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLIHDDSLTFKEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARENQTTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINRLSDYDVDAIVPQSFLKDDSIDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRKFDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKSKLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAKSEQEIGKATAKYFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLSMPQVNIVKKTEVQTGGFSKESILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKGKSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVKKDLIIKLPKYSLFELENGRKRMLASAGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRVILADANLDKVLSAYNKHRDKPIREQAENIIHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLDATLIHQSITGLYETRIDLSQLGGD
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-02-26
Deposition Author(s): Hirano, H. , Hoki, M. , Itoh, Y. , Nakagawa, R. , Nureki, O. , Omura, S.N. , Shuto, Y.