8YDV
Crystal structure of the receptor binding domain of sars-cov-2 omicron ba.5 variant spike protein in complex with cespiace
PDB DOI: 10.2210/pdb8ydv/pdb
Classification: VIRAL PROTEIN/INHIBITOR Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct
Deposited: 2024-02-21 Deposition Author(s): Fujiyoshi, Y. , Nakamura, S. , Numoto, N.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.2 Å
Crystal structure of the receptor binding domain of sars-cov-2 omicron ba.5 variant spike protein in complex with cespiace
Fujiyoshi, Y. , Nakamura, S. , Numoto, N.
Primary Citation of Related Structures: 8YDV
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| SARS-CoV-2 inhibiting peptide CeSPIACE | A | 39 | Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct | DKLWILQKIYEIMVRLDEEGHGEASLMVSDLIYEFMKRD |
| SARS-CoV-2 inhibiting peptide CeSPIACE | C | 39 | Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct | DKLWILQKIYEIMVRLDEEGHGEASLMVSDLIYEFMKRD |
| Spike protein S1 | B | 230 | Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct | TNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFSAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGVNCYFPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGSNSENLYFQGSHHHHHHHHHHGLNDIFEAQKIEWHE |
| Spike protein S1 | D | 230 | Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct | TNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFSAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGVNCYFPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGSNSENLYFQGSHHHHHHHHHHGLNDIFEAQKIEWHE |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2024-02-21 Deposition Author(s): Fujiyoshi, Y. , Nakamura, S. , Numoto, N.