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8YDT

Crystal structure of the receptor binding domain of sars-cov-2 alpha variant spike protein in complex with ce41

PDB DOI: 10.2210/pdb8ydt/pdb

Classification: VIRAL PROTEIN/INHIBITOR
Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct

Deposited: 2024-02-21
Deposition Author(s): Fujiyoshi, Y. , Nakamura, S. , Numoto, N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.5 Å

Literature

Crystal structure of the receptor binding domain of sars-cov-2 alpha variant spike protein in complex with ce41

Fujiyoshi, Y. , Nakamura, S. , Numoto, N.

Primary Citation of Related Structures: 8YDT


Proteins
Molecule Chains Sequence Length Organism Sequence
SARS-CoV-2 inhibiting peptide Ce41 A 39 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct DKEWILQKIYEIMRRLDEEGHGEASLRVSDLIYEFMKKD
SARS-CoV-2 inhibiting peptide Ce41 C 39 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct DKEWILQKIYEIMRRLDEEGHGEASLRVSDLIYEFMKKD
Spike protein S1 B 230 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTYGVGYQPYRVVVLSFELLHAPATVCGSNSENLYFQGSHHHHHHHHHHGLNDIFEAQKIEWHE
Spike protein S1 D 230 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTYGVGYQPYRVVVLSFELLHAPATVCGSNSENLYFQGSHHHHHHHHHHGLNDIFEAQKIEWHE
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2024-02-21
Deposition Author(s): Fujiyoshi, Y. , Nakamura, S. , Numoto, N.