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8YBM

Crystal structure of nanobody seb-nb6 bound to staphylococcal enterotoxin b (seb)

PDB DOI: 10.2210/pdb8ybm/pdb

Classification: ANTITOXIN
Organism(s): Staphylococcus Aureus , Vicugna Pacos

Deposited: 2024-02-15
Deposition Author(s): Ding, Y. , Liu, P. , Liu, R. , Zong, X.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.04 Å

8ybm
Literature

Crystal structure of nanobody seb-nb6 bound to staphylococcal enterotoxin b (seb)

Ding, Y. , Liu, P. , Liu, R. , Zong, X.

Primary Citation of Related Structures: 8YBM


Proteins
Molecule Chains Sequence Length Organism Sequence
Enterotoxin type B A 240 Staphylococcus Aureus , Vicugna Pacos MESQPDPKPDELHKSSKFTGLMENMKVLYDDNHVSAINVKSIDQFLYFDLIYSIKDTKLGNYDNVRVEFKNKDLADKYKDKYVDVFGANYYYQCYFSKKTNDINSHQTDKRKTCMYGGVTEHNGNQLDKYRSITVRVFEDGKNLLSFDVQTNKKKVTAQELDYLTRHYLVKNKKLYEFNNSPYETGYIKFIENENSFWYDMMPAPGDKFDQSKYLMMYNDNKMVDSKDVKIEVYLTTKKK
Enterotoxin type B C 240 Staphylococcus Aureus , Vicugna Pacos MESQPDPKPDELHKSSKFTGLMENMKVLYDDNHVSAINVKSIDQFLYFDLIYSIKDTKLGNYDNVRVEFKNKDLADKYKDKYVDVFGANYYYQCYFSKKTNDINSHQTDKRKTCMYGGVTEHNGNQLDKYRSITVRVFEDGKNLLSFDVQTNKKKVTAQELDYLTRHYLVKNKKLYEFNNSPYETGYIKFIENENSFWYDMMPAPGDKFDQSKYLMMYNDNKMVDSKDVKIEVYLTTKKK
nanobody SEB-Nb6 B 129 Staphylococcus Aureus , Vicugna Pacos QVQLVESGGGSVQAGGSLRLSCGPSGYSDDSRFSMGWFRQAPGKEREGVAVINSHGDTAYADSVKGRFTISKDNGRNTLILQMNSLKPEDTAIYVCASTRAYQLYSGSRSLRPVDYDYWGQGTQVTVSS
nanobody SEB-Nb6 D 129 Staphylococcus Aureus , Vicugna Pacos QVQLVESGGGSVQAGGSLRLSCGPSGYSDDSRFSMGWFRQAPGKEREGVAVINSHGDTAYADSVKGRFTISKDNGRNTLILQMNSLKPEDTAIYVCASTRAYQLYSGSRSLRPVDYDYWGQGTQVTVSS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2024-02-15
Deposition Author(s): Ding, Y. , Liu, P. , Liu, R. , Zong, X.