8XZV
Architecture of the spinach plastid-encoded rna polymerase
PDB DOI: 10.2210/pdb8xzv/pdb
Classification: TRANSCRIPTION Organism(s): Eubacterium Ramulus
Deposited: 2024-01-21 Deposition Author(s): Lu, C. , Wang, G.-L. , Yu, L.-J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.16 Å
Architecture of the spinach plastid-encoded rna polymerase
Lu, C. , Wang, G.-L. , Yu, L.-J.
Primary Citation of Related Structures: 8XZV
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA-directed RNA polymerase subunit alpha | A | 335 | Eubacterium Ramulus | MVREKIRVSTQTLQWKCVESRTDSKCLHYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYSTILGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPRGVTAQDIILPPYVEIVDNTQHIASLTEPIDLCIGLQLERNRGYHIKAPNNFQDGSFPIDALFMPVRNVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEENVNLEDNQHKVSLPLFTFHNRLAEIRKNKKKIALKFIFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKMKHFRIEDVKQIFGTLEKHFVIDLKNKR |
| DNA-directed RNA polymerase subunit alpha | O | 335 | Eubacterium Ramulus | MVREKIRVSTQTLQWKCVESRTDSKCLHYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYSTILGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPRGVTAQDIILPPYVEIVDNTQHIASLTEPIDLCIGLQLERNRGYHIKAPNNFQDGSFPIDALFMPVRNVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEENVNLEDNQHKVSLPLFTFHNRLAEIRKNKKKIALKFIFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKMKHFRIEDVKQIFGTLEKHFVIDLKNKR |
| pTAC6 | K | 324 | Eubacterium Ramulus | MTSTFLLLPTQLLPPKPPFLPFCTLSPPPTTTTTLSLLRPPPLFTSLKSRDFRVFSDDGDGDGEYEMDDEEAEEVDNKKDFDVEYEPLGVVSSAGMSADEVIQVIQSKNFVSTQGWNSELVVDYRINEDEFHKICLFDCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPDKYIRCAKTDYGWYNVTEPPIDAPRDPMYKSEREVSKVFLTKHYRNRRLNDPEFVLDFEEIYVIDSRTKSVTRARVLVTVPEGRNRDRKGDLLVIRDNGNSFKITHASKRDDPTTVIEREEWTRTRQDMERHLRKLRDFSISNWI |
| superoxide dismutase | L | 284 | Eubacterium Ramulus | MSAVAAPSAISISSSFLTHPVMFAGFKGGLNSTRFSPWKLKETRVRRASADVVTAKFDLNPPPYPIDALEPHMSKQTFEYHWGKHHRAYVDNLNKQIVGTELDGLPLEEVVRITYNKGDMLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLAQIEKDFGSFEAFTTEFKTAAATQFGSGWAWLVYKANKLDVGNAVNPKPSEDDKKLVVVKSPNAVNPLVWDYYPILTVDVWEHAYYLDFQNRRPDYLSIFMENLVSWDAVNARYEAAKAFATEREEEAAQN |
| superoxide dismutase | M | 273 | Eubacterium Ramulus | MLLTSKGVGKSEMGSLTATNPVSSPLHANGLSSRIKCPTFFNQKRRDEGSKRRPGVVAYYGLKKPPYNLDALEPYMSQKTLESHWGVQHRNYLEALNRHLSRSDTLYGHTMDELVKVTYNYGNPLPEFNDAAQVWNHDFFWESMQPGGGESPTLGLLQQIEKDFGSFPNFKEKFIEAAMTLFGSGWVWLVLKRKEKQLAVVKTSNAVTPILWDDIPIICLDLWEHAYYLDYKNDRAEYVNVFMNHLVSWHAATARLARAQAFVNLGEPKIPVA |
| Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 | N | 678 | Eubacterium Ramulus | MQILQTSHFLPLSLLPKTPLKPPIPIFHNPNFHPNFSLLSSSSSLLPIPPKSYASDEFPVDETFLEQFGPKDTETEEEARKRNWVERGWAPWEEILSPEADFARKSLNEGEEVALKNPDTIEAFKMLKPSYRKKKMEEMGLTEDEYYARQFDIKGEILDPLETYWDGPLVVRHVAPRDWPPPGWEVDRKELEFIREGHKMMAERVDMKELDNVIREKEGMCMDRYKVFLKQYQEWVEFNKDKLEEESYEHDQDYHPGRRKRGKDYEEGMYELPFYYPGQICLGKVTTLHLYQGAFVDVGGVYEGWVPIKGNDWYWIRQHIKVGMHVMVEILAKRDPYRFRFPLELRFVDPNIDHLLFQRFEYPPIFHRDEDTNLDELRRDCRRPPFPRKDPGVKVEEEPLLSDHPYVDKLWQINVAEQMILDDMEANPDKYKGKKLSELTDEEEFDEEHSVEYTKVQYKKSLLPKTILKTSVKELDLESAFAERQLHNRLQKEAEERGEDYKVDKLRRNIEMDEYDFIHWRRSFEEREALLRDISCRQALGLPLQEPGRYVDPSILGKDQYDPSHPLYRYDYWGEPKNSEKTKQERVTDAHNKSVVGKGNVWYEMSYEDAVEEMKYRESHPKDNTERETDEEAESDDDDSDDDFDYSILSDLSADFASQPHVNGTESPSISDEGMFEE |
| Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 | P | 170 | Eubacterium Ramulus | MSLSLSSLPFNSLLPLSSSTKFEAGPIILRPLGFSIRSQAKPKSRSPVQNGRQVWRRRKLSKKDVFMEAKLERVPFLEEQMRKVNEGGGVMAGDIDRLMKSEDNRFAFVNEIAAEATAYVNNNRDEYGHKKAIHHVLSNRMNDAGFARPEAYLETEPFSPGPTYLKENFY |
| pTAC18 | Q | 143 | Eubacterium Ramulus | MASVIWSPTFHSSVIRTNKSELKRCDHNVSRSGCIKAMRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVRVVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD |
| Fructokinase-like 2, chloroplastic isoform X2 | S | 583 | Eubacterium Ramulus | MASLSFTQFRSIPRWNYKAPVLATVEFMLVTDHRLQNRCVLSETSKKAIVASVVQDEGPNEPEGTKKTRTRRTTTRGRKKATTELQDGDSELTLSASASEQEISDPEASISGSEKPKRRTRKKVLHTEMKLFSAVSAISTEKVKTEKKPRGRKRKEETSKVDDDISETEFINLEEVVYLADEENEDDNIDLNLEKCNGEDIDFTYGWPPLVCCFGAAQHAFVPSGRPANRLIDHQIHEALKEALWAPDKFIRAPGGSAGGVAIALASLGGRVAFMGKLGNDDYGQTMLYYLNVKSVQTRSVCVDDKRWTAMSQMKIAKRGALRATTVKPCAEDSLSKSEINIDVLKEAKMFYLNTSSLVDANMRKTTMRALKISKKLGSVIFYDLNLPLPLWKSGEETKSLIQQVWSLADVIEVTKQELEFLCGMNPPEEFDTKKNQRFKFEHYEADIIAPLWHENLKVLFVTNGTSKIHYYTKEHNGAVLGVEDAPMSPFTQDMSASGDGLVAALMRMLAVQPHLITDKEYLERSVKYAINCGVIEQWIVTRQQGYPPKVGIEEDEEETIPDPSGIRSTTEREFRTRMPVLC |
| MurE | J | 774 | Eubacterium Ramulus | MFLQPFLTLPSTISSPTNSSSSSSSLHFTKPLFLRPSISLLRRKTPSAAGNYYPNPSDDDPPEAPEDSSHGVSKFGQIQRQAARARKLEEEDFEKNRSVFLDAIKDVEDAPENEDYSTGVSGSGDDLFGDIDKAIAQKRKEFVKKGLLKPNPPKSERVVEVADDELGQEEVVDLEEIDELQGLRVVDVSEKEEEFDDDDIDVEVSELGKNGSSSSLFDASFDIDFDSLGNNSSNKVRIVEPSFKMTLAELLDECKVVPISVYGDLEVEITGIEHDSRLVNSGDLFVCCVDGNLCLIEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNAALPALAAAFFRYPTKSMSVIGITGTHGKTTAAHLIKTMYEAMGLRTGMMSSVAYYVHGDNKLDFPEANPDAVLVQKLMAKMLHNGTEAVVMEASSNELTHTRCEEIDFDIAVFTNLSRDNSHFQGNEEEFRVAQAKLFSRMVDPDRHRKIVNVDDPNAPFFIAQGNPNVPVLTFALENKDADVHPLKFELSLFETTVLVNTPQGILEISSGLLGRHNIYNILAAVTVGIAVGAPLEDIVRGIEEVDAVPGRCEVIDEEQAFGVIVDHARTPDALSRLLDSVRELQPRRIITVIGSCGEKERGKRPMLAKVATDKSDVTMLTSDNQGSEDPLDILDDMLAGIGWTMQDYLKHGENDYYPPLPNGHRLFLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAYQVDGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH |
| DNA-directed RNA polymerase subunit beta | B | 1070 | Eubacterium Ramulus | MLRDGNEGMSTIPGFNQIQFEGFWRFIDQGLTEELSKFPKMEDTDQEIEFQLFVETYQLAEPLIKEKDAVYESLTYSSELYVSAGLIWKTRREMQEQTILIGNIPLMNSLGTFIVNGIYRIVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRSELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILDNVCYPEIFLSFLNDKEKKKIGSKENAILEFYQQFACVGGDPVFSESLCKDLQKKFFQQRCELGRIGRRNMNRRLNLDIPENNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKHKRIRSVADLLQDQFGLALVRLENVVRGTISGAIRHKLIPTPQNLVTSTPLTTTFESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGPWGSLESPYYEISERSKRVQMLYLSPSRDEYYMLASGNSLALNQGIQEEQVVPARYRQEFLTIAWEQVHFRSIFSFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSQSEKCIVGTGLERQVALDSGVLAIAEHEGKIIYTNTDKIVLLGNGNTVSIPLVMYQRSNKNTCMHQKPQIPRGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTYVTSQGPEKVTSEIPHLEAHLLRNLDKNGIVRLGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIHVYISQKREIKVGDKVAGRHGNKGIISRILLRQDMPYLQDGRPVDMIFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPGKSRIFDGRTGDPFEQPVIIGNPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPNPEDAPESFRLLVRELRSLALELNHFLVSERNFQINRMEA |
| DNA-directed RNA polymerase subunit beta' | C | 677 | Eubacterium Ramulus | MIDQYKHQQLRIGSVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANFLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRTIIDYSFAEWKELGEEGSTGNEWEDRKVGRRKDFLVRRMELVKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLSTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGICANRYNPWNHKTYQNERIDDTNYKSMKEPFFCNFYDAIGAYRQKRIHLDSPLWLRWQLDQRIIASKEAPIEVHYESLGTYHEIYAHYLIIRSVKKEIIDIYIRTTVGHISLYREIEEAIQGFYQACS |
| DNA-directed RNA polymerase subunit beta'' | D | 1357 | Eubacterium Ramulus | MAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYSTSEYLRQEMNPNFRMTDPYNPVHIMSFSGARGNVSQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRRDCGTIRGISVSPQNSTMPERILIQTLIGRVLADDIYMGSRCIATRNQDIGVGLVNRFITLRTQLISIRTPFTCRSASWICRLCYGRSPTHGGLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIQFNEDLVHPTRTRHGHPAFLCYIDLYVTIESDDILHNVNIPPKSFLLVQNDQYVESEQVIAEIRAGTSTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWVLSGKPYRSSVVPFSLSKDQDQMNTHSLSFEQIYISNPSVTNDQVKDKLSDSFSKKEDRITDYSELNRIGHCNLIYPAKNLDLLAKKRRNRFIIPFQGSQERKKELMSLSGISIEIPINGIFRKNSIFAYFDDPRYRRKSSGITKYGTIEMHSIVKKEDLIEYRGVKEFRPKYQMKVDRFFFIPEEVHILAGSSSIMVRNNSIIGVDTWITLNTRSRIGGVVRVERKKKKIELTIFSGDIHFPGETDKISRHSGILIPPSRKNSKDSKNLKKWIYVQRITPTKKKYFVLVRPVVPYEITDGINLATLFPQDLLQERDNVQLRVVNYILYGNGKVTRGISDTSIQLVRTCLVLNWNQDKKGSSIEEARGSFVEVRTNGMIQDFLKVNLVKPAISYISKRNDPSSEKKEGSDHTNMNPFYSIYIYPKTKLQKSFNQNQGTVRTLLGINKECQFFLILSSSNCFRIGPFKGVKYPKELIKKDPLIPIRNSFGPLGTALQIANFFSFYYLITHNQILVTNYLQLDNLKQTFQPFKFQYYLMDENGRIYNPDPCSNIIFNPFKLNWYFLHYHFCEETSTKIDLGQFVCENVCITKKGTHLKSGQVLIVQFDSVVIRSAKPYLATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSSQHKDIPLKTKKQNLFEGEMGDILFYHRELFESCLSKN |
| Fructokinase-like 1, chloroplastic | E | 472 | Eubacterium Ramulus | MAIHILSPIPSSLFLSPIPTPLFPPFSTSTQIRASTNSNNGVQEPPKRRGRPKGSTKSNTPKTPKKLSGSSQNAEFENGSTLTWDELEDFDDGMDFPYLDPPLICCFGAVQKEFVPSVRVSEHQMDPDIYSGWKMMQWNPPEFGRAPGGPVSNVAISHVRLGGRAAVIGKVGEDDFGEELVLMMNKENVQTRAVKFDSNVKTACSYMRVKFSDDGKMKMETVKEAAEDSLVASELNLAVLKEARIFHFNSEVLTSPSMNTTLFRAIKLSKKFGGLVFFDLNLPLPLWKSRDETREVIKQAWEEANIIEVSREELEFLLDEDHYERRKNYRPQYYSENYEQSKNRRDYYHYTREEISPLWHDGLKFLFVTDGTLRIHYYAPSFDGVVVGTEDVLITPFTCDRTGSGDAVVAGIMRKLTSHPEMYEDQDVLERQLRFSIAAGIISQWTIGAVRGFPTESATQNLKEQVYVPSMW |
| Thioredoxin-like protein CITRX, chloroplastic | F | 181 | Eubacterium Ramulus | MQIPTAPRSISSAASNLFLYFPPFHLNSSLIKPTTLNFPLNHNLPTSISIPTLIPTKKLLCKPPSAKHVREDYLVKKLSANEITELVRGERNVPLIIDFYATWCGPCILMAQELEMLAVEYEKNAMIVKVDTDDEYEFARDMQVRGLPTLYFISPDPNKDAIRTEGLIPIQMMRDILDNDM |
| Thioredoxin-like protein CITRX, chloroplastic | R | 181 | Eubacterium Ramulus | MQIPTAPRSISSAASNLFLYFPPFHLNSSLIKPTTLNFPLNHNLPTSISIPTLIPTKKLLCKPPSAKHVREDYLVKKLSANEITELVRGERNVPLIIDFYATWCGPCILMAQELEMLAVEYEKNAMIVKVDTDDEYEFARDMQVRGLPTLYFISPDPNKDAIRTEGLIPIQMMRDILDNDM |
| Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 | G | 518 | Eubacterium Ramulus | MANLSTNWVFQDRGLRCMIPCDGSFFKASSSNSMLLNRGRLCPLPARSRLHSIKCQQEEEAFEEVSVERAPYYSYKDSSSGRIEPASGARASIPGQDYWPEGTADRVRAARAPEPKGESTSDSSFGKRPGSRRKNYKGSVAVAVAGSQELSPVLSDPELTETSDDIGEDPIDSSEYVVYQADLESEELSEYEKDKKFGRPHPFVDPKVKKPIEEPLTSEELWWNWRKPDKEQWSRWQRRKPDVETVFLKAMAETGQVKLYGEQPTLTETSLYRARRHLFKEERLKAEQERLEKIGPMAFYSEWVKAWKGDTSREAIQKHFEETGEDENTQLIEMLSHQTDREYRIMMGTDIRIRRDPLAMRMREDQIKEIWGGDPVYPTINYIQDPDIVIDYRGPDFHEPTPNMLAHLKEHGKIISREDLEKLLAKEKTEEHELAEVDDAMARAIDIGENEDEDEDSDSEGNDEAEEKINRNWSVHKSNPQLRKSKDKPKKKDSLSLDEAVDDSENLTDFLLDFDEED |
| pTAC3 | H | 892 | Eubacterium Ramulus | MAHILSSKFLPFNPTLHPSPHFLSPPPLKPPNSVIVSAVSTTERKSRRRRQPKGDDTSVAGSSAAEKGLRLVFMEELMSKARNRDAIGVSDVIYDMIVAGLTPGPRSYHGLVVAHVLNADEEGAMKSLRRELSVGLVPLHETFVALVRLFGSKGRATRGLEILAAMEKLNYDIRKAWLVLVEELVRSNHLEDANKVFLKGAKGGLRATDEIYDLMIEEDCKSGDHSNALTIAYEMEAAGRMATTFHFNCLLSVQANCGIPEVAFATFENMEFGEDYMKPDTETYNWVIQAYTRAESYDRVQDVAELLGLMVEDHKRLQPNMRTHVLLVECFTKYCVIREAIRHFRALKNFEGGTRLLHSQGNFGDPLSLYLRALCREGRIEELLDALETMAKDNQPIPPRAMILSRKYRTLISSWIEPLQEEAELGYEVDYMARYISEGGLTGERKRWVPRRGKTPLDPDVEGFIYSNPVETSFKQRCLEEWKIRHRKLLRHLRNEGPAVLGANASESDYIRVEERLKKIIKGREKNILKPKAASKMVVSELKEELEAQDLPIDGTRNVLYQRVQKARRINISRGRPLWVPPVLEEEEEVDEELDELISRIKLEEGNTEFWKRRFLGERVIYDNMKPMDGQESEPEETMDDADIVDDGTKEVEEDEADDEEEEAEVEVEVEQTEGQEDLVDRVKDKEVEAKKPLQMIGVQLLKDGDQPTTSKKSRRRARRAAENDDDDDWFPLDLYEAFEEMRKRNIFDVENMYTLADAWGWTWERELKNRPPRRWSQEWEVELAIKIMSKVIELGGIPTIGDCAIILRAAIKAPLPSAFLIILQTTHSLGYRFGSPLYDEIITLCLDLGELDAAVAIVADLETSGITVPDETLDKVIAARQIFDSPADEAS |
| Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 isoform X2 | I | 490 | Eubacterium Ramulus | MTSHSISMASTILLHHSPHRFLSNFQLCSFNNGFPTARKPNSTVSTSENTLRPVKSLVETSSFPLFQEPQIVETTSEMNLADPDFYKIGYVRSFRAYGVEFREGPDGFGVFASKDIEPLRRARMIMEIPLELMLTISKRLPWMFFPDIVPVGHPIFDIINSTDPKTDWDLRLACLLLLAFDQEDNFWQLYGDFLPSADECTSLLLATEEDLLELQDESLELTMREQQHRCLEFWEKNWHSAAPLKIKRLARDPKIFMWAASIAQTRCINMEMRIGALIQDANVLVPYADMLNHSFQPNCFFHWRFKDRMLEVMINPGSRIKKGEEMTVNYLSGQQNNIFMQRFGFSSAVNPWDAICFSGDSRIHLDTFLSVFNITGLRQEYYYNSKSAKEGDSFVDGAVIAAARTLPTWSDRDVPIIPSVERKAAKELQEQCHEILAKYPTTAKQDQQILDATEDGRRTLEAAIKYRLHRKLFIGKVIDALEIYQDRILF |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2024-01-21 Deposition Author(s): Lu, C. , Wang, G.-L. , Yu, L.-J.