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FASTA Sequence PDB Format mmCIF Format
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8XPO

Cryo-em structure of lassa virus rdrp elongation complex with the ntp form of compound hnc-1664 bound in the active site

PDB DOI: 10.2210/pdb8xpo/pdb

Classification: REPLICATION
Organism(s): Human Immunodeficiency Virus Type 2 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2024-01-04
Deposition Author(s): Gong, P. , Jing, X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.02 Å

8xpo
Literature

Cryo-em structure of lassa virus rdrp elongation complex with the ntp form of compound hnc-1664 bound in the active site

Gong, P. , Jing, X.

Primary Citation of Related Structures: 8XPO


Proteins
Molecule Chains Sequence Length Organism Sequence
RNA-directed RNA polymerase L L 2231 Human Immunodeficiency Virus Type 2 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MEEDIAYVKDLVSKYLVDNERLSRQKLAFLVQTEPRMLLMEGLKLLSLCIEVDSCNANGCEHNSEDKSVEKILHECGILTPSLCFVVPDGYKLTGNVLILLECFVRSSPANFEQKYIEDLKKLEQLREDLKSVDINLIPLIDGRTSFYNEQLPDWVNDKLRDTLFSLLRYAQESNSLFEESEYSRLCESLSMTSGRLSGIESLNTLLDNRSDHYEEIIALCHQGINNKLTAHEVKLQIEEEYQVFRNRLRGGEIKCQFMRVNKDHLLSEFNKLYIDDGVVVEENLEQLTHQFKRASPILRFLYSDIEGEEDRRNTQAIKEHQMQCWRSFLNKVKSLRILNTRRKLLLIFDTLILLASKYDHIKQGCLQGWLGSCFVSVNDRLVSLDSTKRDLKKWIERRQQVESSKSTAPSQCLSKNQILSSIIQKTIKRATAAMEDVGINMNHFGVDMSVIGLDCYDSIMNFDVTGVTPTISYQKSQEETFPYAMGVVELSETTDLGRLSSLSLALINSMKTSSTVKLRQNEFGAARYQVVRCKEAYCQEFLLDGVKFQLVYQKTGECSKCYAINNDKVGEVCSFYADPKRYFPAIFSAEVLQATVDTMITWIKDCNELEKELTHIKLLTKMILVLILAHPSKRSQKLLQNLRYFIMAYVSDYHHVDLMDKIKEKLITETEFLLYKLIRALISLILCNEVKSMMTNRFKFILNVSYMCHFITKETPDRLTDQIKCFEKFLEPKIEFGHVSVNPADIATEEELMDMAYHAKKFLSKEGCTAPRGPEYKKPGVSKKFLSLLTSSFNNGSLFKEKEVKKELRDPIITSGCATALDLASNKSVVVNKYTDGSRVLNYDFNKLTALAVTQLTEVFSRKGKHLLNRQDYEYKVQQAMSNLVLGSQQQGVNVDRSDLDEILLEGSASLYFDQLRETVQKIVDQYREPAGLGSMKGGNSEPSINDLDELIPNKFHIRLIKGELSNHMVEDFDCEILPDSFYKEFCDNVYSNHKMKEKYFYCGHMSQCPIGELSKAVTTRTYFEQEYFQCFKSVLLIMNANKLMGKYSHYRSRNLNFKFDTGKLSDDVRISERESNSEALSKALSLTNCTTAMLKNLCFYSQESPQSYNSVGPDTGRLKFSLSYKEQVGGNRELYIGDLRTKMFTRLIEDYFEALSLQLSGSCLNNEKEFENAILSMKLNVSLAHVSYSMDHSKWGPMMCPFLFLAVLQNLIFLSKDLQADIKGRDYLSTLLTWHMHKMVEIPFNVVSAMMKSFIKAQLGLRKSTSQSITEDFFYSNFQVGVVPSHVSSILDMGQGILHNTSDFYALISERFINYAISSVCGGSIDAYTSSDDQISLFNQDLTDLMQRDPEEFKTLLEFHYYMSNQLNKFISPKSVVGRFVAEFKSRFYVWGDEVPLLTKFVAAALHNIKCKEPHQLAETIDTIIDQSVANGVPVHLCNLIQLRTLSLLQYARYPIDPFLLNCETDVKDWVDGNRSYRIMRQIESLIPEACGKIRSMLRKLFNKLKTGQLHEEFTTNYLSGEHVSSLKNLCIILDVDPPSESDLEFSWLNLAAYHPLRMVLRQKVIYSGAVNLDDEKIPTIVKTIQNKLSSTFTRGAQKLLSEAINKSAFQSSIASGFVGLCRTLGSKCVRGPNKENLYIKSIQSLISNTQGIELLTNNHGIQYWRVPLNLKEEKISVAGYFRPLLWDYMCISLSTAIELGAWVLGEPKAAKPLEFFKHNPCDYFPLKPTASKLLEDRVGVNHIIHSLRRLYPSMFEKHILPFMSDLASTKMKWSPRIKFLDLCVALDVNCEALSLVSHIVKWKREEHYIVLSSELRLSHSRSHEPMVEERVVSTSDAVDNFMRQIYFESYVRSFVATTRTLGSFTWFPHKTSIPEGEGLQRLGPFSSFVEKVIYKGIERPMFKYDLMMGYAWIDFDVEPAKFNYNQLIASGLVSSKFDSLEDFFDAIESLPPGSVKLSQTIRFQIKSQDASFRESFAIHLNFVGSMNEQGKYLVQDVAVMYSGAVNSCVLTDCWRLVLSGPTFKGKSAWYVDTEAINEFMSDTNQLGEVTPVEIVIDIDRLQFVEHDFVLVGPCSEAIPLVVHRGGLWECNKRLASFSPVLQDQDLELFVREVGDTSPDLLIGALSAMMLDRLKLRMQWSGVDIVSVLKKVMPKDGLKVLNAAFEAVDDWIEFKGYALCFSKSKRRVMIQSSGGKLRLKGRTCEELLEKEEEVEDIESASNSLEVLFQ

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (14-MER) a 14 NA GCGCACCGGGGAUC
RNA (32-MER) t 32 NA GGGAGAUGAAAGUCUCCAACUGAAGAGUCCAA
RNA (9-MER) p 9 NA GGACUCUUC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-01-04
Deposition Author(s): Gong, P. , Jing, X.