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8XON

Cryo-em structure of the clpc1:clpp1p2 degradation complex in streptomyces hawaiiensis

PDB DOI: 10.2210/pdb8xon/pdb

Classification: HYDROLASE
Organism(s): Bos Taurus , Streptomyces Hawaiiensis

Deposited: 2024-01-01
Deposition Author(s): Long, F. , Xu, X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 1.96 Å

Literature

Cryo-em structure of the clpc1:clpp1p2 degradation complex in streptomyces hawaiiensis

Long, F. , Xu, X.

Primary Citation of Related Structures: 8XON


Proteins
Molecule Chains Sequence Length Organism Sequence
NDP-hexose 4-ketoreductase S 696 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFAEGTPSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDALHTLVGAGAAEGAIDAASILKPMLARGELQTIGATTLDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLIDEAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDAEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDAVEKAHPDIFNSLLQILEDGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAQGDTKSNYERMKNKVSDELKQHFRPEFLNRVDDVVVFPQLSQADILKIVDLMIDKVDERLKDRDMGIELSSSAKELLSKKGYDPVLGARPLRRTIQREIEDSLSEKILFGELRPGHIVVVDTEGEGETKTFTFRGEE
NDP-hexose 4-ketoreductase R 696 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFAEGTPSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDALHTLVGAGAAEGAIDAASILKPMLARGELQTIGATTLDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLIDEAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDAEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDAVEKAHPDIFNSLLQILEDGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAQGDTKSNYERMKNKVSDELKQHFRPEFLNRVDDVVVFPQLSQADILKIVDLMIDKVDERLKDRDMGIELSSSAKELLSKKGYDPVLGARPLRRTIQREIEDSLSEKILFGELRPGHIVVVDTEGEGETKTFTFRGEE
NDP-hexose 4-ketoreductase Q 696 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFAEGTPSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDALHTLVGAGAAEGAIDAASILKPMLARGELQTIGATTLDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLIDEAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDAEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDAVEKAHPDIFNSLLQILEDGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAQGDTKSNYERMKNKVSDELKQHFRPEFLNRVDDVVVFPQLSQADILKIVDLMIDKVDERLKDRDMGIELSSSAKELLSKKGYDPVLGARPLRRTIQREIEDSLSEKILFGELRPGHIVVVDTEGEGETKTFTFRGEE
NDP-hexose 4-ketoreductase P 696 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFAEGTPSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDALHTLVGAGAAEGAIDAASILKPMLARGELQTIGATTLDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLIDEAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDAEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDAVEKAHPDIFNSLLQILEDGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAQGDTKSNYERMKNKVSDELKQHFRPEFLNRVDDVVVFPQLSQADILKIVDLMIDKVDERLKDRDMGIELSSSAKELLSKKGYDPVLGARPLRRTIQREIEDSLSEKILFGELRPGHIVVVDTEGEGETKTFTFRGEE
NDP-hexose 4-ketoreductase O 696 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFAEGTPSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDALHTLVGAGAAEGAIDAASILKPMLARGELQTIGATTLDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLIDEAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDAEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDAVEKAHPDIFNSLLQILEDGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAQGDTKSNYERMKNKVSDELKQHFRPEFLNRVDDVVVFPQLSQADILKIVDLMIDKVDERLKDRDMGIELSSSAKELLSKKGYDPVLGARPLRRTIQREIEDSLSEKILFGELRPGHIVVVDTEGEGETKTFTFRGEE
NDP-hexose 4-ketoreductase T 696 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFAEGTPSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLKDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDALHTLVGAGAAEGAIDAASILKPMLARGELQTIGATTLDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLIDEAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDAEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELIAEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELSKALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDAVEKAHPDIFNSLLQILEDGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAQGDTKSNYERMKNKVSDELKQHFRPEFLNRVDDVVVFPQLSQADILKIVDLMIDKVDERLKDRDMGIELSSSAKELLSKKGYDPVLGARPLRRTIQREIEDSLSEKILFGELRPGHIVVVDTEGEGETKTFTFRGEE
casein X 24 Bos Taurus , Streptomyces Hawaiiensis XXXXXXXXXXXXXXXXXXXXXXXX
ATP-dependent Clp protease proteolytic subunit A 226 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLASDPEKDIYLYINSPGGSITAGMAIYDTMQYIKNDVVTIAMGLAAAMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTIEQITRDSDRDRWFDAFEAKEYGLIDDVMTTAAGMPGGGGTGA
ATP-dependent Clp protease proteolytic subunit B 226 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLASDPEKDIYLYINSPGGSITAGMAIYDTMQYIKNDVVTIAMGLAAAMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTIEQITRDSDRDRWFDAFEAKEYGLIDDVMTTAAGMPGGGGTGA
ATP-dependent Clp protease proteolytic subunit C 226 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLASDPEKDIYLYINSPGGSITAGMAIYDTMQYIKNDVVTIAMGLAAAMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTIEQITRDSDRDRWFDAFEAKEYGLIDDVMTTAAGMPGGGGTGA
ATP-dependent Clp protease proteolytic subunit D 226 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLASDPEKDIYLYINSPGGSITAGMAIYDTMQYIKNDVVTIAMGLAAAMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTIEQITRDSDRDRWFDAFEAKEYGLIDDVMTTAAGMPGGGGTGA
ATP-dependent Clp protease proteolytic subunit E 226 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLASDPEKDIYLYINSPGGSITAGMAIYDTMQYIKNDVVTIAMGLAAAMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTIEQITRDSDRDRWFDAFEAKEYGLIDDVMTTAAGMPGGGGTGA
ATP-dependent Clp protease proteolytic subunit F 226 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLASDPEKDIYLYINSPGGSITAGMAIYDTMQYIKNDVVTIAMGLAAAMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTIEQITRDSDRDRWFDAFEAKEYGLIDDVMTTAAGMPGGGGTGA
ATP-dependent Clp protease proteolytic subunit G 226 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLASDPEKDIYLYINSPGGSITAGMAIYDTMQYIKNDVVTIAMGLAAAMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTIEQITRDSDRDRWFDAFEAKEYGLIDDVMTTAAGMPGGGGTGA
ATP-dependent Clp protease proteolytic subunit H 207 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMEYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISVYINSPGGSFTALTAIYDTMQYVKPDVQTVCMGQAAAAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSDLEIAANEILRMRSQLEDMLAKHSTTPVEKIREDIERDKILTAEDALSYGLIDQVISTRKMDNSSLR
ATP-dependent Clp protease proteolytic subunit I 207 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMEYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISVYINSPGGSFTALTAIYDTMQYVKPDVQTVCMGQAAAAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSDLEIAANEILRMRSQLEDMLAKHSTTPVEKIREDIERDKILTAEDALSYGLIDQVISTRKMDNSSLR
ATP-dependent Clp protease proteolytic subunit J 207 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMEYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISVYINSPGGSFTALTAIYDTMQYVKPDVQTVCMGQAAAAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSDLEIAANEILRMRSQLEDMLAKHSTTPVEKIREDIERDKILTAEDALSYGLIDQVISTRKMDNSSLR
ATP-dependent Clp protease proteolytic subunit K 207 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMEYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISVYINSPGGSFTALTAIYDTMQYVKPDVQTVCMGQAAAAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSDLEIAANEILRMRSQLEDMLAKHSTTPVEKIREDIERDKILTAEDALSYGLIDQVISTRKMDNSSLR
ATP-dependent Clp protease proteolytic subunit L 207 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMEYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISVYINSPGGSFTALTAIYDTMQYVKPDVQTVCMGQAAAAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSDLEIAANEILRMRSQLEDMLAKHSTTPVEKIREDIERDKILTAEDALSYGLIDQVISTRKMDNSSLR
ATP-dependent Clp protease proteolytic subunit M 207 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMEYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISVYINSPGGSFTALTAIYDTMQYVKPDVQTVCMGQAAAAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSDLEIAANEILRMRSQLEDMLAKHSTTPVEKIREDIERDKILTAEDALSYGLIDQVISTRKMDNSSLR
ATP-dependent Clp protease proteolytic subunit N 207 Bos Taurus , Streptomyces Hawaiiensis MGSSHHHHHHSSGLVPRGSHMEYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISVYINSPGGSFTALTAIYDTMQYVKPDVQTVCMGQAAAAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSDLEIAANEILRMRSQLEDMLAKHSTTPVEKIREDIERDKILTAEDALSYGLIDQVISTRKMDNSSLR
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2024-01-01
Deposition Author(s): Long, F. , Xu, X.