PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8XKO

Cryoem structure of compound hnc-1664 bound with rdrp-rna complex of sars-cov-2

PDB DOI: 10.2210/pdb8xko/pdb

Classification: VIRAL PROTEIN/RNA
Organism(s): Severe Acute Respiratory Syndrome Coronavirus , Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct

Deposited: 2023-12-23
Deposition Author(s): An, L. , Hong, Y. , Li, M. , Li, S. , Zhang, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.29 Å

Literature

Cryoem structure of compound hnc-1664 bound with rdrp-rna complex of sars-cov-2

An, L. , Hong, Y. , Li, M. , Li, S. , Zhang, K.

Primary Citation of Related Structures: 8XKO


Proteins
Molecule Chains Sequence Length Organism Sequence
RNA-directed RNA polymerase nsp12 A 944 Severe Acute Respiratory Syndrome Coronavirus , Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct MGSADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQHHHHHHHHHH
Non-structural protein 8 B 210 Severe Acute Respiratory Syndrome Coronavirus , Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct HHHHHHENLYFQGAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKL
Non-structural protein 8 D 210 Severe Acute Respiratory Syndrome Coronavirus , Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct HHHHHHENLYFQGAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKL
Non-structural protein 7 C 89 Severe Acute Respiratory Syndrome Coronavirus , Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct SKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQHHHHHH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (5'-R(P*CP*UP*AP*CP*GP*CP*GP*UP*AP*GP*CP*AP*UP*G)-3') e 14 NA CUACGCGUAGCAUG
RNA (5'-R(P*UP*UP*CP*AP*UP*GP*CP*UP*AP*CP*GP*CP*GP*UP*AP*G)-3') f 19 NA UUUUUCAUGCUACGCGUAG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-12-23
Deposition Author(s): An, L. , Hong, Y. , Li, M. , Li, S. , Zhang, K.