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8XK9

Ternary complex of dna polymerase sfm4-3 recognizing c2 methyoxy nucleotide

PDB DOI: 10.2210/pdb8xk9/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Thermus Aquaticus , Synthetic Construct

Deposited: 2023-12-22
Deposition Author(s): Gong, W. , Liu, H. , Wen, C. , Yang, L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.4 Å

Literature

Ternary complex of dna polymerase sfm4-3 recognizing c2 methyoxy nucleotide

Gong, W. , Liu, H. , Wen, C. , Yang, L.

Primary Citation of Related Structures: 8XK9


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3') b 12 NA GACCACGGCGCC
DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3') e 12 NA GACCACGGCGCC
DNA (5'-D(*AP*AP*CP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-R(P*(OMG))-3') c 16 NA AACGGCGCCGTGGTCG
DNA (5'-D(*AP*AP*CP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-R(P*(OMG))-3') f 16 NA AACGGCGCCGTGGTCG

Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase I, thermostable A 539 Thermus Aquaticus , Synthetic Construct MEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAALEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQSIPVRTPLGQRIRRAFIAEEGWLLVALDYSQEGLRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVNPLMRRAAKTINFGVLYGMSAHRLSQKLAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVRQAAERRAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE
DNA polymerase I, thermostable D 539 Thermus Aquaticus , Synthetic Construct MEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAALEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQSIPVRTPLGQRIRRAFIAEEGWLLVALDYSQEGLRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVNPLMRRAAKTINFGVLYGMSAHRLSQKLAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVRQAAERRAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-12-22
Deposition Author(s): Gong, W. , Liu, H. , Wen, C. , Yang, L.