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FASTA Sequence PDB Format mmCIF Format
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8XK2

A neutralizing nanobody vhh60 against wt sars-cov-2

PDB DOI: 10.2210/pdb8xk2/pdb

Classification: ANTIVIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct

Deposited: 2023-12-22
Deposition Author(s): Guo, H. , Ji, X. , Lu, Y. , Yang, H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.4 Å

8xk2
Literature

A neutralizing nanobody vhh60 against wt sars-cov-2

Guo, H. , Ji, X. , Lu, Y. , Yang, H.

Primary Citation of Related Structures: 8XK2


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 A 219 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTLEVLFQ
Spike protein S1 C 219 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTLEVLFQ
Spike protein S1 E 219 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTLEVLFQ
Spike protein S1 G 219 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTLEVLFQ
VHH60 nanobody B 121 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct EVQLVESGGGLVQPGGSLRLSCAASGRTFRVNLMGWFRQAPGKGRELVASINGFDDITYYPDSVEGRFTISRDNAKRMVYLQMNSLRAEDTAVYYCAAYDSDYDGRLFNYWGQGTQVTVSS
VHH60 nanobody D 121 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct EVQLVESGGGLVQPGGSLRLSCAASGRTFRVNLMGWFRQAPGKGRELVASINGFDDITYYPDSVEGRFTISRDNAKRMVYLQMNSLRAEDTAVYYCAAYDSDYDGRLFNYWGQGTQVTVSS
VHH60 nanobody F 121 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct EVQLVESGGGLVQPGGSLRLSCAASGRTFRVNLMGWFRQAPGKGRELVASINGFDDITYYPDSVEGRFTISRDNAKRMVYLQMNSLRAEDTAVYYCAAYDSDYDGRLFNYWGQGTQVTVSS
VHH60 nanobody H 121 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct EVQLVESGGGLVQPGGSLRLSCAASGRTFRVNLMGWFRQAPGKGRELVASINGFDDITYYPDSVEGRFTISRDNAKRMVYLQMNSLRAEDTAVYYCAAYDSDYDGRLFNYWGQGTQVTVSS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-12-22
Deposition Author(s): Guo, H. , Ji, X. , Lu, Y. , Yang, H.