8XBW
The cryo-em structure of the rad51 n-terminal lobe domain bound to the histone h4 tail of the nucleosome
PDB DOI: 10.2210/pdb8xbw/pdb
Classification: DNA BINDING PROTEIN/DNA Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2023-12-07 Deposition Author(s): Hatazawa, S. , Kurumizaka, H. , Ogasawara, M. , Shioi, T. , Takizawa, Y.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.89 Å
The cryo-em structure of the rad51 n-terminal lobe domain bound to the histone h4 tail of the nucleosome
Hatazawa, S. , Kurumizaka, H. , Ogasawara, M. , Shioi, T. , Takizawa, Y.
Primary Citation of Related Structures: 8XBW
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Histone H3.1 | E | 139 | Homo Sapiens , Synthetic Construct | GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H4 | F | 106 | Homo Sapiens , Synthetic Construct | GSHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| DNA repair protein RAD51 homolog 1 | L | 342 | Homo Sapiens , Synthetic Construct | GSHMAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(P*AP*CP*CP*GP*CP*TP*TP*AP*AP*AP*CP*GP*CP*AP*CP*GP*TP*A)-3') | i | 156 | NA | ATCAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACACCCAAGACACCAGGCACGAGACAGAAAAAAACAACGAAAACGGCCACCA |
| DNA (5'-D(P*TP*AP*CP*GP*TP*GP*CP*GP*TP*TP*TP*AP*AP*GP*CP*GP*GP*T)-3') | j | 153 | NA | TGGCCGTTTTCGTTGTTTTTTTCTGTCTCGTGCCTGGTGTCTTGGGTGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTGAT |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2023-12-07 Deposition Author(s): Hatazawa, S. , Kurumizaka, H. , Ogasawara, M. , Shioi, T. , Takizawa, Y.